Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00630 ATGGTCTTTCATTTTGTTTTAACTATTTTGATTATTATTCTCATTTCAAATCTGACTGTCGCAAAACAATCTAAAATAAATGGATTGAAAATAAATGTGATTGATCGTTGTTGGAGATTGAATCCTGAATGGAGGATAAATCGACCTCAATTAGCAACATGTTCTGTGGGCTACACTGGCAAGATGACAAACAATGTTGGTAAAGACCTCGTCCATTATAAAGTTATTGACCCTAGTGATGATCCTATAAACCCCAAACCTGGTACCTTGAGGTATGGAGCTTCTGTAATTCAAAGTAAAGTGTGGATCACATTCCAAAGAGATATGCATATTAAACTTGAGAGACCACTTCTTATTAGTAGTTTTACCACTATTGATGGTCGAGGCGTTAAAGTTGACATTGCTGAAAATGCATGTTTAATGGTTTTTAAGGCCACCAATGTAATCATCCATGGTGTTCGACTTCATCATTGCAAACCTCAAGCCCCAGGAGTTGTGATGGGACCAGAAGGAAAGGTGATTCCTTTGGGCCATGTAGACGGAGATGCAATAAGATTAGTTACCGCTTCAAAGATTTGGATTGATCATAATACACTTTATAATTGTCAAGATGGCTTACTTGATGTAACACGAGGTTCAACAGATGTGACTATATCTAATAATTGGTTTAGAAATCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGTTATGTGAGAGATAAAAACATGAAGGTTACTGTTGTATACAATCACTTTGGACCTAATTGCAATCAGCGTATGCCAAGAATTCGTCATGGATATGCGCATGTTGCCAACAATCTTTACTTAGGATGGATGCAATATGCCATTGGTGGAAGTATGAAACCTAGCCTTAAAAGTGAAGCTAATCTCTTTATAGCACCGACATCAGGGAGTAAAGAGGTAACATGGAGAAAGAATAATTATACAAATGGAGATGCATGGGAGTTTCATTCAGTAAAGGATGCATTTGAGAATGGAGCTTCCTTCACAATGACAGAAGGAGGACGTGTAATATGTGAGATCATTAACTCGCTCTTCAGGCATATTACGATGCACTAA 1083 0.3749 MVFHFVLTILIIILISNLTVAKQSKINGLKINVIDRCWRLNPEWRINRPQLATCSVGYTGKMTNNVGKDLVHYKVIDPSDDPINPKPGTLRYGASVIQSKVWITFQRDMHIKLERPLLISSFTTIDGRGVKVDIAENACLMVFKATNVIIHGVRLHHCKPQAPGVVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMKPSLKSEANLFIAPTSGSKEVTWRKNNYTNGDAWEFHSVKDAFENGASFTMTEGGRVICEIINSLFRHITMH* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00630 360 Gene3D - 31 352 IPR012334 -
Lapu2g00630 360 Pfam Pectate lyase 120 299 IPR002022 -
Lapu2g00630 360 SMART amb_all 108 305 IPR002022 -
Lapu2g00630 360 PANTHER PECTATE LYASE 18-RELATED 29 341 IPR045032 GO:0030570
Lapu2g00630 360 SUPERFAMILY Pectin lyase-like 32 338 IPR011050 -
Lapu2g00630 360 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Lapu2g00630 360 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Lapu2g00630 360 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Lapu2g00630 360 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Lapu2g00630 360 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Lapu2g00630 360 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00630 Lapu-Chr2 5515045 5516591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00630 62 354 Polysaccharide Lyase AT5G09280 63.636 3.37e-144 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00630 K01728 - gmx:100780437 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00630 2 5515045 5516591 Lapu2g00630 2 5515045 5516591 ECH