Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00622 ATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTCTGATCATATTTCACGTGGACAATACCAAGGAAAATATGGAGAGGACAGAATTTGGGATAACCATCATAGTTCAATGGATGACTTAACGGATATTGAGAAAGAAGACATTGACCGTGCAATTGCAATCTCTCTGTCAGAGGAGGATCACCCGAAAGGGAAAAAAGTTGTTGAGGATGACTCACAATCTGAAGATGACAAACTCTGTAAAATTGATGAAGAGGAAGATGAATATCTTGCTAAAATTCTTCAAGAAGATGAACGTCTAGCTAAACTTAAACGAGAAGAAGATGAACGCCTCGCTAAACTTCAACAAGAAGAATATGACCACCTGGCTAAAATTCAACTAGAAGAAGTTGAACGCCTTGCTAAAATTCTACAAGAAGAAGATGAACGTCTTGCTAAAATTCAACAAGATGAAGTTGAACGTCTTGCTAAAGCTCAACTTGAGGAAGACGAACAACTTGCTAGGGCAATTCAAGAAAGTTTGGTCATTGATTCTCCTTCTCCATCTGACAATGATTCACCATTTCTATCGTATCCTCACCTCTTTCCCCCTGGATACAGAATCTGTGCTGGGTGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATGCATGCCGTTTGCCAATCACTGATTATGAGTTTTCCATGTCTGGCAATAGCCCTTATCATAAATCATGCTCTAGGCAGAAGCATCACCCCAAATGTGATGTTTGCAAGAACAACATCCCAAGTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAGTACTGCCCGTCTCATGAGCTTGATGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTTTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTCACCACTATTTTGAGGAGGCCAAGGATCCGAGATGGTTACCGGGTCATAGACATGATAACTGAACCTTATAAGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTAGTTCTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTCAGTCCAGAAGTTGAAGAAGGAATCTGTCAAGTCTTGGGTCATATGTGGTTAGATTCAGAGCTCTATTCCGGATCTGGGAATGACGGCACATCATCTTCTTCGTCTTCATCTTCGTCACCTTCCTCCTCTTCTGCAGCATCAAAGAAAGGTAAACGGTCGGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATCGGGTAACCAAGCAATGCTCAAGTATGGGCTCAAAAGGACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTGA 1710 0.4193 MGWFRKLLKGSDHISRGQYQGKYGEDRIWDNHHSSMDDLTDIEKEDIDRAIAISLSEEDHPKGKKVVEDDSQSEDDKLCKIDEEEDEYLAKILQEDERLAKLKREEDERLAKLQQEEYDHLAKIQLEEVERLAKILQEEDERLAKIQQDEVERLAKAQLEEDEQLARAIQESLVIDSPSPSDNDSPFLSYPHLFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACRLPITDYEFSMSGNSPYHKSCSRQKHHPKCDVCKNNIPSNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIRDGYRVIDMITEPYKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLGHMWLDSELYSGSGNDGTSSSSSSSSSPSSSSAASKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRSGNQAMLKYGLKRTLDHIHMTGSFPY* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00622 569 FunFam Protein DA1-related 1 195 254 - -
Lapu2g00622 569 MobiDBLite consensus disorder prediction 490 515 - -
Lapu2g00622 569 Pfam Protein DA1 350 564 IPR022087 -
Lapu2g00622 569 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 228 284 - -
Lapu2g00622 569 Coils Coil 126 149 - -
Lapu2g00622 569 CDD LIM_DA1 201 252 - -
Lapu2g00622 569 ProSiteProfiles LIM domain profile. 199 259 IPR001781 -
Lapu2g00622 569 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 226 - -
Lapu2g00622 569 ProSitePatterns LIM zinc-binding domain signature. 201 235 IPR001781 -
Lapu2g00622 569 Gene3D Cysteine Rich Protein 197 259 - -
Lapu2g00622 569 PANTHER PROTEIN DA1-RELATED 2 127 569 IPR045218 -
Lapu2g00622 569 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 160 173 IPR003903 -
Lapu2g00622 569 Coils Coil 85 116 - -
Lapu2g00622 569 MobiDBLite consensus disorder prediction 490 511 - -
Lapu2g00622 569 CDD UDM1_RNF168_RNF169-like 104 167 - -
Lapu2g00622 569 SMART lim_4 200 252 IPR001781 -
Lapu2g00622 569 Pfam LIM domain 201 255 IPR001781 -
Lapu2g00622 569 SMART uim 42 61 IPR003903 -
Lapu2g00622 569 SMART uim 160 179 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00622 Lapu-Chr2 5430367 5437482 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu2g00622 DA1-like 4.8e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00622 - - vum:124826554 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00622 2 5430367 5437482 Lapu2g00622 2 5430367 5437482 ECH
Lapu3g01615 3 20440058 20446470 Lapu2g00622 2 5430367 5437482 ECH
Lapu2g00622 2 5430367 5437482 Lapu3g01615 3 20440058 20446470 PCT