Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00621 ATGTCCCAGGATTTTCAACCAGGAATCTTCAGCTTCCCGAATGGGTTGGAGAGGGGAAGGGTGAGTCCACAGCAACAGATCCGGAGGGACAAAGTGAGGTTGCAAGGAGGGTTCGGGGCGGCACCATTGGTAGGGATAGAGGAAGAGGAACCGGTGTACGAGACTGCCGGGATGTTGTCAGAGATGTTCAATTTTCCACCAGCGGCTGCGGCGGAATTGCTGGAGCAGCAGCCTTTTACGGCCACTTTTAGGGCGGCGAGGCAAGCTGGAGAGTGGTACGGTAACAGACAACAACAAGCGGTGAATATGATGATGGGTGGATTGGGGGATTCGAAGAACCAAAACAGTGTGAATAACAACAACTCGCATCAACCACAGCACCAGATTTCAAGCATTAATGCTGACTCAGCAGCTGCCATGCAGCTTTTTCTGATGAACCCTCAAACGAGATCGCCTTCCCCTCCTCAAAGCCACACCACTCCTTCTTCAACACTCCACATGTTGCTTCCCAATCCTTCCTCCAATCCCCTCCAAGGTTTCACTGGTTCGGCCGCGGGAGGTTCTTTTGGTCAATTCACATGGGTTCCTGAGAGTGCTCATCAGCAAGGAGGCGTGGTGGAAGGGCAAGGTCTTTCGCTATCGTTGTCTTCTACACTGGAAGCAGCGAAAGCCGAGGAATTGAGGATGGGAGATAGTGGTTTTCTATATTACAATCATCAACAAGGAGGTGGTGCTTCTTCTTCTTCCACAGTTCAATTTCCGTACAAGAACAATAGTCATCAGCAACACCAAGCATTGCATTTGCAAGGGGTGATAGGACATGACAACAACCACCAGGGACATGTTGGGTTCGGGTCATCATCGTTAGGTGTAGTTAACGTTCTGAGAAATTCAAAGTATGTGAAGGCTGCACAAGAGTTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAGCAAGTTCAATAGGCAGAATTCAAACCCTAATTCAAATCCCGATGGTGGTGGTTCTTCGCCTTCATCAAAAGATGCTGCTTTGCCTCCTCCTCCTACTTTGTCAGCGGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTTGACGAGGTCGACAGGAGATACAACCATTACTGTGAGCAGATGCAAATGGTGGTGAACTCATTTGACCTGATGATGGGTTTTGGTGCGGCAGTGCCATACACAGCACTGGCTCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGACGCAATAACAGCGCAGCTGAAGCAAAGTTGTGAGCTACTAGGAGAGAAAGAAGGGGCGGGGACCTCAGGTTTGACCAAGGGTGAGACACCAAGGCTTAAGGTGCTAGAGCAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGGATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGATCTGTCAACATTTTGAGAGCTTGGCTTTTCGAACATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGATTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCTATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAGCAGAGATTGCAGAAGAGAGAGAAAATAACCAAAGCAACAACAGCAATATTAGTGGGAACCAAGCACAAACTCCAAGCACACCAGGAGCAGCTACAACATCAACAGCAACAACTGTAGCACCACCAACAATTACAGCAACAAAACCAACAGGGAAAAAATCCGATATCAATGTCTCAGAAAGCGACTCTTCACTTGCATTGAACAGACAAGGCTTCTCGGAAAACCAAGGAAAGCAGTCCACCACCACCTCTACCACTGTCATGGCCTCCGTCAGCGCCACCACCTCTGAGATTGCGCCACCCGGGTCACAGTGCTTCGACTCAGATCTGCCCCCACACAGATTAATGGCCACTGATGACACATGTCACTTGGTCACAGCAGATTTTGGGACCACATCTGCAAGTGCTGACATTGGATCCACACTCATTAGATTTGGGACCACAGTTGGTGATGTGTCACTCACCCTAGGGCTTCGCCATGCCGGGAACATGCCAGAGAAAACTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2193 0.4897 MSQDFQPGIFSFPNGLERGRVSPQQQIRRDKVRLQGGFGAAPLVGIEEEEPVYETAGMLSEMFNFPPAAAAELLEQQPFTATFRAARQAGEWYGNRQQQAVNMMMGGLGDSKNQNSVNNNNSHQPQHQISSINADSAAAMQLFLMNPQTRSPSPPQSHTTPSSTLHMLLPNPSSNPLQGFTGSAAGGSFGQFTWVPESAHQQGGVVEGQGLSLSLSSTLEAAKAEELRMGDSGFLYYNHQQGGGASSSSTVQFPYKNNSHQQHQALHLQGVIGHDNNHQGHVGFGSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKSKFNRQNSNPNSNPDGGGSSPSSKDAALPPPPTLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKQSCELLGEKEGAGTSGLTKGETPRLKVLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAEIAEERENNQSNNSNISGNQAQTPSTPGAATTSTATTVAPPTITATKPTGKKSDINVSESDSSLALNRQGFSENQGKQSTTTSTTVMASVSATTSEIAPPGSQCFDSDLPPHRLMATDDTCHLVTADFGTTSASADIGSTLIRFGTTVGDVSLTLGLRHAGNMPEKTPFSVRDFGAI* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00621 730 SMART HOX_1 480 544 IPR001356 GO:0003677
Lapu2g00621 730 MobiDBLite consensus disorder prediction 322 360 - -
Lapu2g00621 730 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 164 565 - -
Lapu2g00621 730 SUPERFAMILY Homeodomain-like 482 547 IPR009057 -
Lapu2g00621 730 Gene3D - 483 545 - -
Lapu2g00621 730 SMART prehox3 289 428 IPR006563 -
Lapu2g00621 730 FunFam BEL1-like homeodomain protein 4 483 545 - -
Lapu2g00621 730 MobiDBLite consensus disorder prediction 106 129 - -
Lapu2g00621 730 Pfam Associated with HOX 294 427 IPR006563 -
Lapu2g00621 730 Coils Coil 543 566 - -
Lapu2g00621 730 Pfam Homeobox KN domain 497 536 IPR008422 GO:0003677|GO:0006355
Lapu2g00621 730 MobiDBLite consensus disorder prediction 560 639 - -
Lapu2g00621 730 MobiDBLite consensus disorder prediction 322 341 - -
Lapu2g00621 730 MobiDBLite consensus disorder prediction 558 639 - -
Lapu2g00621 730 CDD homeodomain 480 541 IPR001356 GO:0003677
Lapu2g00621 730 ProSiteProfiles 'Homeobox' domain profile. 477 540 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00621 Lapu-Chr2 5403527 5411663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00621 1 77 Homeobox Transcription Factor Family AT2G23760 36.264 4.10e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu2g00621 POX 3.3e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00621 - - gmx:100786231 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00621 2 5403527 5411663 Lapu2g00621 2 5403527 5411663 ECH
Lapu3g01614 3 20345583 20353601 Lapu2g00621 2 5403527 5411663 ECH
Lapu2g00621 2 5403527 5411663 Lapu3g01614 3 20345583 20353601 PCT