Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00590 ATGGTAGTTTGCGATTTCTGGGAGCATTCTCTCGCTCACAGAAAAAAACCCAATCCCACTCCACACCACCACCAAGCTTTCATGGACCTCAGCTTGGACTTGAGTTTGGGCTTTGTCCCCAAACCCATTTCCCTCTTTTTCGCCCAGGTTTCTGAGAACAGAGACAAGCGCGACAAAGTTGCCACGCTCGACGGCTTTCTGCAGAGATTGGAGGACGAATTGAGGAAAGTCGAGGCCTTCAAACGCGAGCTTCCTCTCTGCATGCTCCTCCTAAACGATGCTATAGCCAGATTGAAGGAGGAAAAAGTAAAGTGTTCAATATTGCAAGATCCACCAACAAGTGAAGAGTTTGTGCCTCCCAAAACCACTACTGGGGGAAACGAAAATGAAGGATGTGAGAAGAAGAATTGGATGAGTTCAGCTCAGCTTTGGAGCACCCAGAAAACCAAATCGAGGAATGAAGAAGGTGACAGGTCTGTGCCAGAGAACACAATTAACGGGAATTCGTGTGCCCCGAGGAAGGAGGGTTCACAAATTCCGAGCTTTAGTTTGATGGGTCATGCCTCTGAACTGAGTCATAGCAATTCCAAGAGTGTTTGTGGAGATACCAGTTCTGGCTCTTCTTTGCTCCGTGTTGAGGTACAGAGCCAGCCACAACCGCCGCAACATATGCAGCAGAATCCAAGGAAACAAAGGCGGTGCTGGTCGCCGGAGCTTCACCGTCGTTTTGTGGATGCGCTTCAACAACTTGGTGGCGCACAAGTGGCCACTCCTAAACAGATTAGAGAGCTGATGCAGGTGGAGAGCCTGACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTGAGGAGATTCCCAGTTTCATCAGTTGGTCAGGCTGATAACGGCTCATGGATGGGCCAAGATCAATGTGGGGATAAATCAAAGGGAAACTTGTCGCAGTCTGGTTCTCCACAAGGTCCTCTCACACCTCTCCTCCTAGGAGGAGGGTCTGCTAAGGGTCTCTCAAGCCCTGGAAGGAACAGTGTGGATGCAGAAGATGAGCAATCAGATTGCAGGAATTGGAAAGGAGGGCTCCACCATCACCTTGAAGCTGATAACCAGAGCCTCTAA 1125 0.4924 MVVCDFWEHSLAHRKKPNPTPHHHQAFMDLSLDLSLGFVPKPISLFFAQVSENRDKRDKVATLDGFLQRLEDELRKVEAFKRELPLCMLLLNDAIARLKEEKVKCSILQDPPTSEEFVPPKTTTGGNENEGCEKKNWMSSAQLWSTQKTKSRNEEGDRSVPENTINGNSCAPRKEGSQIPSFSLMGHASELSHSNSKSVCGDTSSGSSLLRVEVQSQPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVESLTNDEVKSHLQKYRLHVRRFPVSSVGQADNGSWMGQDQCGDKSKGNLSQSGSPQGPLTPLLLGGGSAKGLSSPGRNSVDAEDEQSDCRNWKGGLHHHLEADNQSL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00590 374 MobiDBLite consensus disorder prediction 294 374 - -
Lapu2g00590 374 MobiDBLite consensus disorder prediction 160 180 - -
Lapu2g00590 374 MobiDBLite consensus disorder prediction 111 180 - -
Lapu2g00590 374 MobiDBLite consensus disorder prediction 294 325 - -
Lapu2g00590 374 MobiDBLite consensus disorder prediction 348 367 - -
Lapu2g00590 374 MobiDBLite consensus disorder prediction 116 149 - -
Lapu2g00590 374 MobiDBLite consensus disorder prediction 213 232 - -
Lapu2g00590 374 FunFam Myb family transcription factor 229 287 - -
Lapu2g00590 374 SUPERFAMILY Homeodomain-like 228 288 IPR009057 -
Lapu2g00590 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 227 287 IPR017930 -
Lapu2g00590 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 35 359 IPR044787 GO:0003700|GO:0006355
Lapu2g00590 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 230 285 IPR006447 GO:0003677
Lapu2g00590 374 Coils Coil 63 83 - -
Lapu2g00590 374 Gene3D - 229 286 - -
Lapu2g00590 374 Pfam Myb-like DNA-binding domain 232 283 IPR001005 -
Lapu2g00590 374 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00590 Lapu-Chr2 5147184 5149871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00590 28 288 G2-like Transcription Factor Family AT2G03500 39.456 2.58e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu2g00590 Myb_DNA-binding 2.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00590 - - pvu:PHAVU_002G021400g 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00590 2 5147184 5149871 Lapu3g02449 3 46339566 46342979 PCT
Lapu3g01575 3 19236476 19239135 Lapu2g00590 2 5147184 5149871 PCT