Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00588 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAATTTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCCAAGCTTCTAAACGAACTCAGTGCCGCGCAGCGAGACGATGCAGTAAAGTCCCTCGCGTACGAGGCCGAGGCGCGTCTCAGGGACCCTGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTCCAACACAAGCTCAGGCAGATCCAGATGGAACTCAACAATGCAAAGAAGGAACTCGCAACATACATAGGTCCACAAGCTTTTCAAGGCTTACCAGCCCCCATTCTCCAGCAGCACCCCAATAACCCTTTTTCTGGCTCCCTTTATGGTAACATGGCGGGCGTGACGGCCGCCGCTCACGGTGGTCAGCTGGTGATTCGCGACGCTCAACCGCCGCAGCAGCATCAGATCTTAGAGGCCCAGCAGTTAGCTGCGGCTGTAGCAGCGAGGGAGCAGCAGGAGATGTTCAGGAGTTACGAGCATCAACAGCAGCAGGAGTTTCTGCGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGAGGGTTCAGCCAGATATCTCCAGCTGCCGCTTCCGCTGATCAGTTGTCTCCTTCTTTGGCTTTGGGATCTTTCGATAACGCTTATCACATGCAGCAACCACACCAGGGAGAGCCTCATCCCCATTCTCATCCTCACAACATTCCTTTTGAAGCTCAGCTCCTGCTCCCTCCACAGCAGAAACAAACGCAGCAACAAACCCAGCCGCCCCAACTGCCTCTTCACCAGCAACCGTCTGAAAGCGAGGAGTGTAGGAGTCTTGGTCCATCCTGTTAA 909 0.5611 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQMELNNAKKELATYIGPQAFQGLPAPILQQHPNNPFSGSLYGNMAGVTAAAHGGQLVIRDAQPPQQHQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASSAGGFSQISPAAASADQLSPSLALGSFDNAYHMQQPHQGEPHPHSHPHNIPFEAQLLLPPQQKQTQQQTQPPQLPLHQQPSESEECRSLGPSC* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00588 302 Coils Coil 87 107 - -
Lapu2g00588 302 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Lapu2g00588 302 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Lapu2g00588 302 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 239 - -
Lapu2g00588 302 MobiDBLite consensus disorder prediction 267 302 - -
Lapu2g00588 302 MobiDBLite consensus disorder prediction 264 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00588 Lapu-Chr2 5126076 5127184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00588 3 241 AS2 family AT5G66870 52.222 6.01e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu2g00588 LOB 9.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00588 - - gmx:102664012 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00588 2 5126076 5127184 Lapu2g00588 2 5126076 5127184 ECH
Lapu2g00588 2 5126076 5127184 Lapu3g01573 3 19194066 19195569 PCT
Lapu3g01574 3 19217295 19217976 Lapu2g00588 2 5126076 5127184 PCT