Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00561 ATGGAGCAGCGAAAGCTTGTGGTCTTGGGAATTCCGTGGGACGTCGACACTGAAGGATTAAGGGAATATATGAGCAAATTTGGGGAGCTGGAAGATTGCATTGTCATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTCGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTATTATCAAGTGAACATATTCTTGGTAATAGGACACTGGAAGTCAAAGTGGCCACACCGAAGGAGGAAATGAGGGCACCAGTCAAAAAGGTCACTAGAATATTTGTAGCCAGGATCCCACAATCAGTAACAGAAGCTGCTTTCCGAAGTCATTTTGAGAAGTATGGTGATATAACAGACCTTTACATGCCCAAGGATCAAGGCTCCAAAACGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGGGGTTCTGCAGTGGTGGTTGATCGAGCTACACCTAAGGCAAGAGTTTCTATTTTTAATAGCTTGTCATTTTACTATAGAAAAGTTTCTGGGAATTTCAGAGATGAAGACTTTAAGCCAATTGGCAGCAGAATGCCACCACAAGGAGGATATGGTGCATACAATGCTTACATTTCTGCAGCCACAAGATATGCAGCACTTGGTACTCCTACTTTGTATGATCATCCTGGCCCAATTTATGGACGGGGAGAACCTGCTCGGAGGACTAGTAAAAAAATTTTCGTTGGTCGTCTTCCCCCAGAAGCATCTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCAAGGGATCCTAAGAGAACAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAGGATGGTGTAGCAGATCGTGTCTCACGAAGGTCTCATGAGATTTGTGGGCATCAGGTTGCAATAGATTCGGCTACGCCCGTTGATGATGCTGGGCCCAGTGGGAATTTCATGATGGAATCTTTTGGGGGATATGGCGGTCCTGTGCGATCGTATGGGAGGATGTACGGTAGCTTAGACTTTGACGATTGGGGTTATGGAATTGGGAGACCATCAAGAGCAGATTGGAGGTATAGACCATATTAG 1134 0.4444 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEAAFRSHFEKYGDITDLYMPKDQGSKTHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKARVSIFNSLSFYYRKVSGNFRDEDFKPIGSRMPPQGGYGAYNAYISAATRYAALGTPTLYDHPGPIYGRGEPARRTSKKIFVGRLPPEASSEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRADWRYRPY* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00561 377 FunFam heterogeneous nuclear ribonucleoprotein 1 84 173 - -
Lapu2g00561 377 FunFam RNA-binding family protein isoform 1 244 327 - -
Lapu2g00561 377 Gene3D - 242 327 IPR012677 -
Lapu2g00561 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 323 IPR000504 GO:0003723
Lapu2g00561 377 SUPERFAMILY RNA-binding domain, RBD 243 346 IPR035979 GO:0003676
Lapu2g00561 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Lapu2g00561 377 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 245 334 - -
Lapu2g00561 377 Gene3D - 88 173 IPR012677 -
Lapu2g00561 377 Gene3D - 1 87 IPR012677 -
Lapu2g00561 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Lapu2g00561 377 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Lapu2g00561 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 303 IPR000504 GO:0003723
Lapu2g00561 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Lapu2g00561 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Lapu2g00561 377 SUPERFAMILY RNA-binding domain, RBD 89 175 IPR035979 GO:0003676
Lapu2g00561 377 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Lapu2g00561 377 SMART rrm1_1 93 164 IPR000504 GO:0003723
Lapu2g00561 377 SMART rrm1_1 5 76 IPR000504 GO:0003723
Lapu2g00561 377 SMART rrm1_1 248 319 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00561 Lapu-Chr2 4872290 4876609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00561 5 195 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 8.02e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00561 K14411 - gmx:100795240 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00561 2 4872290 4876609 Lapu2g00561 2 4872290 4876609 ECH