Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00559 ATGGACGTGGACATACTCAAAACTTCCACGAGTGACACCAGCATGGACATGATGATGATGATGCAAATGGAAAAGTTCCCTGAATTATGTGATTCTTTTTATAACAACACCACTCCTCTCTACCCAGAAAACGAGTTCTTAAGCTCCACCACACTACCTGTGTTCTCCAACGTTAGCCCAAACGTTATAACTCCACCCACCACTTTGGTCAATCCACCACCACCACCCACCTCTAATTTTGTTCTCCAACAACCCATGACACCTCCTCTTGAACCCAACCCTTCGTTTTCGGATAAGAAGAATTCCGTGGCGGCCATGAGGGAGATGATTTTCCGCGTAGCAGTGATGCAACCTATTCACATAGACCCTGAATCTATCAAGCCTCCGAAGAGAAGGAACGTGAAGATTTCGAAGGATCCGCAGAGTGTGGCAGCGAGGCACAGAAGGGAAAGGATAAGCGAGAGAATAAGGATCCTTCAGAGATTAGTCCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGATGAAGCCATTCACTACGTAAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCAGGCGCTAGTAGACCCTTGAGCGTTTTTGGATTCCCTAGTACTGTGTCCAACGCCAATAGTAACGTTAATTATTCTCCTTTTGTGAAGAGTTGCCAACCGTGTCATATGCTGGGTTCTGCAGCTTCTAAACACATGCTCAGTTGA 729 0.4636 MDVDILKTSTSDTSMDMMMMMQMEKFPELCDSFYNNTTPLYPENEFLSSTTLPVFSNVSPNVITPPTTLVNPPPPPTSNFVLQQPMTPPLEPNPSFSDKKNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPLSVFGFPSTVSNANSNVNYSPFVKSCQPCHMLGSAASKHMLS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00559 242 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 76 226 IPR045843 GO:0003700|GO:0006355
Lapu2g00559 242 Gene3D - 135 200 IPR036638 GO:0046983
Lapu2g00559 242 SMART finulus 142 191 IPR011598 GO:0046983
Lapu2g00559 242 CDD bHLH_AtIND_like 137 193 - -
Lapu2g00559 242 FunFam BHLH transcription factor 139 201 - -
Lapu2g00559 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 195 IPR036638 GO:0046983
Lapu2g00559 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Lapu2g00559 242 Coils Coil 175 195 - -
Lapu2g00559 242 Pfam Helix-loop-helix DNA-binding domain 146 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00559 Lapu-Chr2 4853094 4853822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00559 10 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 62.234 3.21e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g00559 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00559 - - gmx:100796649 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00559 2 4853094 4853822 Lapu2g00559 2 4853094 4853822 ECH