Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00556 ATGGCGGACGAGGAGCCAGTAAGTGGAAGGCGAAGGCCGAGGGGACCGGAGTCCACCGCCCGCAGCGAAGCGTTGGAGCGTCTCAAGGCCCGCCTCCGCGGTGGTCGCCGATCCGACGGCACTGGGCCCCAAATCAGGTTAGAAAATCCTATCTACGACACTGTACCTGAGGACGAGTACAACGCCCTCGTAGCCAAGCGCCGCGAACAGGCGCGCTCCTTCATAGTTGATGATGAAGGAATCGGATACGGCGATGAGGGCGAGGAAGAGGACTGGTCTCAGGCCGGATTCACTCTCTCCTCTGATGAATCCGAAGGTGAATCAGAAAGGCCGAAGCGGAAGAAGGTAGAGAAGAAGGATCCCCAGCCGAAACGGCCTTCTTCGTCGCTCTCCGCAGCTGCGGCCATCATGGGAGGGCAGAGGCTGTCCTCCATGTTCACTTCCTCCGTTTTCAAGAAGAGCAGAGACGACAAAGTCTGCGAGAGCATTGTCGACGATGTTATTGCTGAGTTCGCTGCGGACGAGACCGATCGATTGAGGCGTAGAAGGGCGCAAGGGAATTACTCTTCCGCTTCCAACGCAAACAATGCTCTGCGTGTTAATAACACGTTTAGGGATAAGCCTTCTGTTGATATGATTGGGGCTTTTTCTTCATTGCCGGAACACGGTAACGCTGAGTCTGTTAAGGTACTTGTTGAGAGTGACGGTTTTGACTCGGAGTTTGAGCAAAAGAGCGAGGTCGTTAGTGAAATCGAAGATTTCGGGGGTGGTCGTTCTGAAAATGGGCAGGCACCGATAGTGGGAACTGATGATTGTAATAAAGTTAATGAAGGTATGGTTGAGGAGAAAGAGGTGAAAAGTTTTGAAATTGAAGTGAAAGCGGATGCGAAAAAGGAGGTGTTCACTTTGAACGCGAAGGTTAAAGAAGAGGAGGACCCTGCATTGTCTGCGACTGCCGGTTGGAAGGAAGCTATACGCGGTGCTGGTGGGGTTGATGTTGCTGATTTGAAAGATGCTTGGCAGAACCAACAACACTCAGAGTTTGATCTCGAGGAAGATGGATCACTGCCTTTCTATATATTAGATGCCTACGAGGAGTTTTACGGGGAAAATAGGGGCACCCTTTATCTCTTTGGGAAGGTTAAAACAGGGGATTTGTATCAGAGTTGCTGCGTTATTGTGAAGAACATGCAACGGTGCGTCTATGCAGTTCCTAGCCGACCTTTGCATCGCACTGAAGAGATGACGAGTCTAGAGAGAGATGTCCGGGAGTCTCGAATTTCTTCTGCAGATTTCTTTAAAAAGCTGCAAGATGCAGTTTCTGATGTTAAGAATGAGATAGCACAGCATCTGGTGAATTTGGAAGTTTCGAACTTTAGCATGGCACCTGTTAAGAGGAAATACGCATTTGAACGATCTGAAATCCCTGCTGGTGAAAATTATGTGGTGAAAATCAATTATTCATTCAAGGATCCTGTACTTCCAGTAGATCTCAAAGGAGAAAGTTTCTGTGCTCTCTTAGGAACTGGTTGCAGTGCCCTCGAGCTTTTTCTGATTAAACGGAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAAGTTTGCTACGAGCTCATCTTCCCGAAGGGTTAGCTGGTGCAAATTTGAAGTGACCGTTGACTCTCCTAAACACATTAGGACTTCAGCACCTTCAAAAATCACTTCTAAGATTCCTCCAGTGGTTGTTGCAGCAATGAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAGATTGTATCTGCATCAGTTGTCTGTTGCAACATGGTTAAGATTGATACCCCTATGATGGCTTCAGAGTGGAAGAGACCCGGAAGGCTGACCCATTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCGATGGGATTCAACAAGGAGGTTACGGACAGAAACTTAAAAGCTGGTTCAAATATTCTGTGTGCTGAAAGCAGTGAAAGAGCTTTGTTGAACCGCTTGATGTTAGAATTGCACAAGTTGGATTGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTAGCAAGTAGCATGTGGTCTAAACTAGGCCGCCTCAATCGATCCACAATGCCAAAACTTGGAAGAAGAAGCAAGGTTTTTGGTTCTGGAGCAGATCCCGGGATCATGTCATGCATTGCTGGACGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTCAGTTATTCTTTAAGTCACCTTACAAAATCACACCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGACGTTCCAAAAATGTTCCAATCAGCAGAATCGCTAATGGAGCTCATTGAATACGGTGAAACAGATGCATGGTTGTCTATGGAACTGATGTTTTATTTAAGTATTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGAGTTGAATATCTCTTGCTGCATACTTTTCATGCAATGAAATATATGGTCCCAGACAAGTTCTCAAACTATGCTAAAGAAACAAAATTGACGAAACGTAGAGTAACTCATGATGTTGAGGATAGCAACTATGATGTAGATATTGACGATGTAAACTATGACAATGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCGTATGCCGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAGTATATATTGCTTCTGGATTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTTAGACGGATCTTTTCCACGTCTACCATCTAGTAAAACAACTGGAGTTTTGCCAGAGGTGCTGAAAAATCTGGTAGATCGGAGGAAGAAGGTAAAGTCGTGGATAAAGAATGAAAAAAAGAAGAATGAAAAAGCTGATCCTGTTAAAGTTCAGCAACTGGATATTCAGCAGCAAGCTCTTAAGCTTACTGCAAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTGGCTGAGCTCATTACTTTACAAGGAAGGGAGATATTGCAGAGTACTGTTGATTTAGTTCAGAATACCTTGAATTTAGAGGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGTCTAGATGATATTGAGGAAGCTAATAAAATTGCTGTAAAAGTTATTCAAGAGGTCAATAAGAAATACACATGCTTGGAAATTGATCTTGATGGTTTATATAAAAGAATGCTGCTTCTCAAGAAAAAAAAGTACGCAGCTGTAAAGTTGTTGTTTAAAGATGGCACCCCATATGAGGTGATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCTGGAGGGTCATGTGAAGACGTAGTAGAGTCAATCCACAACTCTCTCATGAAGGTACAAGAAGAAATGAGGAACGGAGAAGTACCATTAGAGAAATATGTCATTACGAAGACATTGACTAAACCCCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAGCAAGGTTACTCTTCTGGCTGTTCTGTTGGTGATACAATCCCTTATATAATTTGCTATGAGCAGGGTGGTAGTTCAGGCAGTGCAGGTGGCATTGCTCAACGTGCTAGACATCCTGATGAACTTAAACAGCAACAAGTGACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCCGTGGTATCACGTCTTTGTGCATCAATTCAGGGGACAAGCCCGGAAAGACTAGCTGATTGCCTAGGGCTCGATTCGTCGAAGTTTCATCATAAATCAAGTGAAGCTTTAAACGATGATTCTAGAAGTTCACTCTTGTTCGCTGCAGATGATGAGGAGAGGTATCGGGGATGTGAGCCGCTGGTCTTGTCATGCCCCAGTTGCTCTGGTACATTCGAGTGCCCACCCGTCTTTAAATCTATTTGCGCTTCATTGGGAAGTGAAAGGCCAACCAGCGTATCCCCCGAGGAATCTGACTACAATTTCTGGCGCAAGCTGGGCTGTCCTAAATGCCCAGAAGATGTTAAAATTTATCCTGCGATGATAGCTAATCAGGTCAAAAGGCAAGCAGAGACGTTTGTTTTGATGTACTATAGAGGTTTACTAATGTGTGACGATGAAACGTGTAAGCATAAAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGCCGTCTGCTTAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTTGACACTGTTTCTTGTATAGAAAAGATAGAGGCCAAATCTAGAATAACGATAGAGAAAGAGGTGATCAAAATTAGGCCGATGATTGATCCAGCAGCTTCAACAGCACAGAAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAGACTGGAGGATCTGGTCATTACAGTTTAA 4641 0.4409 MADEEPVSGRRRPRGPESTARSEALERLKARLRGGRRSDGTGPQIRLENPIYDTVPEDEYNALVAKRREQARSFIVDDEGIGYGDEGEEEDWSQAGFTLSSDESEGESERPKRKKVEKKDPQPKRPSSSLSAAAAIMGGQRLSSMFTSSVFKKSRDDKVCESIVDDVIAEFAADETDRLRRRRAQGNYSSASNANNALRVNNTFRDKPSVDMIGAFSSLPEHGNAESVKVLVESDGFDSEFEQKSEVVSEIEDFGGGRSENGQAPIVGTDDCNKVNEGMVEEKEVKSFEIEVKADAKKEVFTLNAKVKEEEDPALSATAGWKEAIRGAGGVDVADLKDAWQNQQHSEFDLEEDGSLPFYILDAYEEFYGENRGTLYLFGKVKTGDLYQSCCVIVKNMQRCVYAVPSRPLHRTEEMTSLERDVRESRISSADFFKKLQDAVSDVKNEIAQHLVNLEVSNFSMAPVKRKYAFERSEIPAGENYVVKINYSFKDPVLPVDLKGESFCALLGTGCSALELFLIKRKIKGPSWLQVSKFATSSSSRRVSWCKFEVTVDSPKHIRTSAPSKITSKIPPVVVAAMNLKTTINEKQNINEIVSASVVCCNMVKIDTPMMASEWKRPGRLTHFTVVRKLDGSIFPMGFNKEVTDRNLKAGSNILCAESSERALLNRLMLELHKLDCDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSTMPKLGRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLSHLTKSHLNKFRKEVAPHDVPKMFQSAESLMELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAMKYMVPDKFSNYAKETKLTKRRVTHDVEDSNYDVDIDDVNYDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKTTGVLPEVLKNLVDRRKKVKSWIKNEKKKNEKADPVKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNTLNLEVIYGDTDSIMIYSGLDDIEEANKIAVKVIQEVNKKYTCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGEVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAGGIAQRARHPDELKQQQVTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEALNDDSRSSLLFAADDEERYRGCEPLVLSCPSCSGTFECPPVFKSICASLGSERPTSVSPEESDYNFWRKLGCPKCPEDVKIYPAMIANQVKRQAETFVLMYYRGLLMCDDETCKHKTRSISLRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVFDTVSCIEKIEAKSRITIEKEVIKIRPMIDPAASTAQKIRDRCAFGWVRLEDLVITV* 1547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00556 1546 PRINTS DNA-directed DNA-polymerase family B signature 929 942 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lapu2g00556 1546 PRINTS DNA-directed DNA-polymerase family B signature 1065 1073 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lapu2g00556 1546 PRINTS DNA-directed DNA-polymerase family B signature 1012 1024 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lapu2g00556 1546 SUPERFAMILY DNA/RNA polymerases 903 1315 IPR043502 -
Lapu2g00556 1546 ProSitePatterns DNA polymerase family B signature. 1067 1075 IPR017964 GO:0000166|GO:0003676
Lapu2g00556 1546 Gene3D - 571 886 IPR036397 GO:0003676
Lapu2g00556 1546 Pfam DNA Polymerase alpha zinc finger 1339 1542 IPR015088 GO:0003887|GO:0006260
Lapu2g00556 1546 Pfam DNA polymerase family B 830 1299 IPR006134 GO:0000166|GO:0003677
Lapu2g00556 1546 Gene3D DNA Polymerase alpha, zinc finger 1338 1531 IPR038256 -
Lapu2g00556 1546 CDD DNA_polB_alpha_exo 571 822 - -
Lapu2g00556 1546 Pfam DNA polymerase family B, exonuclease domain 388 764 IPR006133 -
Lapu2g00556 1546 SMART polmehr3 571 1079 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lapu2g00556 1546 MobiDBLite consensus disorder prediction 103 124 - -
Lapu2g00556 1546 Gene3D Palm domain of DNA polymerase 898 1128 IPR023211 -
Lapu2g00556 1546 MobiDBLite consensus disorder prediction 74 134 - -
Lapu2g00556 1546 FunFam DNA polymerase 1143 1329 - -
Lapu2g00556 1546 MobiDBLite consensus disorder prediction 1 57 - -
Lapu2g00556 1546 FunFam DNA polymerase 1338 1532 - -
Lapu2g00556 1546 Coils Coil 1079 1099 - -
Lapu2g00556 1546 Gene3D - 398 524 - -
Lapu2g00556 1546 Gene3D - 1143 1330 IPR042087 -
Lapu2g00556 1546 CDD POLBc_alpha 905 1315 IPR045846 GO:0003887|GO:1902975
Lapu2g00556 1546 Gene3D - 358 557 - -
Lapu2g00556 1546 FunFam DNA polymerase 398 524 - -
Lapu2g00556 1546 MobiDBLite consensus disorder prediction 1 36 - -
Lapu2g00556 1546 Gene3D Helix hairpin bin 975 1025 - -
Lapu2g00556 1546 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Lapu2g00556 1546 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1544 - -
Lapu2g00556 1546 SUPERFAMILY Ribonuclease H-like 352 859 IPR012337 -
Lapu2g00556 1546 NCBIfam DNA polymerase (pol2) 51 1297 - -
Lapu2g00556 1546 FunFam DNA polymerase 970 1026 - -
Lapu2g00556 1546 FunFam DNA polymerase 571 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00556 Lapu-Chr2 4818546 4830024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00556 2 1544 Core DNA Replication Machinery Family AT5G67100 61.292 0.0 1840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00556 K02320 - gmx:100798779 2657.48