Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00554 ATGCCCGATCAGTCGAGCAGTGGCGCAATGAATGACCAGCTCTCCAACCCCACCTCCATCTTCGGCCTCCGTCTCTGGGTGGTGCTCGGTGTGTGTGTCGGCGCCGCCATCGTCCTCATCCTCTTCCTCATCTCCGTCTGGGTGGCCTTCAAGCGCTCCAAAGCCAACCCCGTTTCCATCCCCGACGTCTCCAAGGAGATCCAAGAAATCAGGGTCGACCACGCCCCCACCCCCAACCCCACCCTCCAACCCGACCCTTTTCCCGAACCTGACCCCGTTCTGCCCACCGAGGACGAAACCAACCCCCTCAGCTACCACAGAATCCAGTTCGAAATTGGGAAGAACCACCGAATCTCCTACCCCGAACGTGCCTTGCTTCGCTCATCTTCCAACGACCCTGCCAGTGCCGAGCCACGCCTCCTCGATCAGGTTCCCACTGTCATTCCCGAAGTTTCTCACTTGGGCTGGGGCCACTGGTACACTCTCCGGGAGCTTGAGGATTCCACCAACGCCTTCGCCCCCGAGAATGTTATTGGCGAAGGAGGTTATGGAATTGTTTATCACGGTATCTTGAACGACAATACTCATGTTGCCATTAAGAATTTGCTCAATAATAGGGGGCAAGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCTATAGGACGAGTTCGCCACAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCCGAAGGAGCTCATAGAATGCTTGTTTATGAGTATGTCGACAATGGTAACTTGGAGCAGTGGCTACATGGGGATGTTGGGCCTTACAGTCCTCTAACATGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGGTTAACTTATCTACATGAGGGGTTGGAACCGAAAGTTGTTCACCGTGATATTAAATCAAGCAACATTTTGCTCAGTAAGCAGTGGAATGCAAAGGTCTCAGACTTTGGCCTCGCCAAACTCCTTGGCTCTGACAACAGTTATATTACCACCCGTGTCATGGGTACTTTTGGATATGTTGCTCCTGAATATGCAAGTACTGGCATGTTGAATGAACGAAGTGATGTTTATAGTTTTGGAATTCTTATTATGGAAGTACTTACAGGAAGGAACCCTGTTGATTATAGTCGGCCTCCAGAAGAGGTGAATTTAGTAGACTGGCTCAAGAAGATGGTTAGTAACAGAAATCCAGAGGGGGTGCTGGATCCCAAGCTTCCTGAGAAACCAACTTCAAGGGCGCTAAAACGAGCCCTTCTTGTAGCCTTACGTTGCACTGATCCTAATGCACAGAAGCGACCTAAAATGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGATCGCAGAGCTAGAAGGGATGCGGGACATTCACCCAATGAGAGAGTGGGGGATGGGTTGAAAGAGGAGGCAGCTGTATCAGTTGATGATGGCAAGCTTGAAAACGGGGTGTGTGTCAATGAGACAAGAACGAACCCTCAAATAGAAAAGCAATAA 1512 0.498 MPDQSSSGAMNDQLSNPTSIFGLRLWVVLGVCVGAAIVLILFLISVWVAFKRSKANPVSIPDVSKEIQEIRVDHAPTPNPTLQPDPFPEPDPVLPTEDETNPLSYHRIQFEIGKNHRISYPERALLRSSSNDPASAEPRLLDQVPTVIPEVSHLGWGHWYTLRELEDSTNAFAPENVIGEGGYGIVYHGILNDNTHVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPYSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNAKVSDFGLAKLLGSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVLTGRNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARRDAGHSPNERVGDGLKEEAAVSVDDGKLENGVCVNETRTNPQIEKQ* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00554 503 CDD STKc_IRAK 178 444 - -
Lapu2g00554 503 SUPERFAMILY Protein kinase-like (PK-like) 148 444 IPR011009 -
Lapu2g00554 503 Gene3D Phosphorylase Kinase; domain 1 152 247 - -
Lapu2g00554 503 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Lapu2g00554 503 Gene3D Transferase(Phosphotransferase) domain 1 248 460 - -
Lapu2g00554 503 MobiDBLite consensus disorder prediction 444 503 - -
Lapu2g00554 503 FunFam Probable serine/threonine-protein kinase At1g01540 152 247 - -
Lapu2g00554 503 Pfam Protein kinase domain 175 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00554 503 FunFam Putative receptor-like serine/threonine-protein kinase 248 458 - -
Lapu2g00554 503 MobiDBLite consensus disorder prediction 444 481 - -
Lapu2g00554 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Lapu2g00554 503 ProSiteProfiles Protein kinase domain profile. 172 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00554 503 PANTHER OS01G0323000 PROTEIN 7 459 - -
Lapu2g00554 503 SMART serkin_6 172 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00554 Lapu-Chr2 4794425 4805547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00554 123 444 Receptor kinase-like Gene Family AT4G02010 44.985 5.22e-87 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lapu2g00554 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00554 - - gmx:100797726 912.138