Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00547 ATGTGGGATCTGAATGACTCTCCCGATCAGAGAAAGGACTACGAATCTGAAGGTTGCTCTTCTTCGCTGAATGATGATAAAGGCAAGAGAGTGGGATCTGTTTCTAATTCAAGCTCCTCTGCGGTTGTCCTCGAAGATGGATCGGAAGAAGAAGACAGTGACAGGGGTGGAAGCAGAACATTGGAGAAAAAAAGCAGCAAAATATTCGGGTTTTCGGTTGCACATGATGACAGTGACCACCCACCCGTCACGCGGCAGTTTTTTCCGGTGGAGGATTCAGACCTTCCTGTCTCCGACGCCGCCGCCGCAGGAGGCGGCGGCGGAAGCTCCTCCTTTCCTCGTGCTCACTGGGTAGGCGTCAAATTTTGTCAATCGGAAACTCTCGGCGCCGGAAAATCAGCTAAAGTGTCGGAGCCGATGAAGAAAAGTCGGCGAGGACCACGGTCTCGAAGCTCACAGTATCGCGGAGTTACCTTTTACAGAAGAACCGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCGGCCATTAAGTTCCGGGGGGTGGACGCAGATATCAACTTCAACATAGAAGACTATGAAGAAGACTTGAAGCAGATGAGCAATTTGACCAAGGAAGAGTTTGTCCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGACGATGGGAGGCCAGAATGGGCCAATTTTTGGGCAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAGGCGGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCTGCATCTATGATAATGAACTTAATTCTGAATCCTCAGGTATAGCTGCAGATCACAATCTGGATTTGAGTTTGGGCAATTCGAGCTCTAAACATGGCAATGGTCAAATATCGGGGAATCACTTGCCAAATTCAGCGGCGGATCAGCACATGCCACCTGAATCTAATTGGCGGAATGGAGGAATTAAGCCAAAGGTTCGTCTGATAAGTATACTACCGAAACCATGTGGTAGAAGCAACATGGAAGCCTATGCAAGAGACGGGCACGGAGAGAGTGAAACCTTGAGACTACTAAGCCAAACTCACCTTCAATCTCCAACCACTAAAGAAATGCATAGATATGGTCCGTATAGGACGCCTGCTGAGCCTCAAATGCCTCATAATTTTGCACATCTTCACCCACCAAATTTTCATGTTCCTAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCCGATCAACAACAATGGCAAGCCGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTAGACCCGCCCTAGGTTGGCAGCAGAAAAATGGGTTCCACTCTCTCATGAGACCTTCATGA 1515 0.4825 MWDLNDSPDQRKDYESEGCSSSLNDDKGKRVGSVSNSSSSAVVLEDGSEEEDSDRGGSRTLEKKSSKIFGFSVAHDDSDHPPVTRQFFPVEDSDLPVSDAAAAGGGGGSSSFPRAHWVGVKFCQSETLGAGKSAKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPCIYDNELNSESSGIAADHNLDLSLGNSSSKHGNGQISGNHLPNSAADQHMPPESNWRNGGIKPKVRLISILPKPCGRSNMEAYARDGHGESETLRLLSQTHLQSPTTKEMHRYGPYRTPAEPQMPHNFAHLHPPNFHVPSSSNGGRIGSDLSLSMSDQQQWQAGPPHLLATAAASSGFPPQIRPALGWQQKNGFHSLMRPS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00547 504 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 77 397 - -
Lapu2g00547 504 ProSiteProfiles AP2/ERF domain profile. 153 209 IPR001471 GO:0003700|GO:0006355
Lapu2g00547 504 ProSiteProfiles AP2/ERF domain profile. 245 302 IPR001471 GO:0003700|GO:0006355
Lapu2g00547 504 SUPERFAMILY DNA-binding domain 244 302 IPR016177 GO:0003677
Lapu2g00547 504 CDD AP2 244 302 IPR001471 GO:0003700|GO:0006355
Lapu2g00547 504 MobiDBLite consensus disorder prediction 328 364 - -
Lapu2g00547 504 MobiDBLite consensus disorder prediction 328 354 - -
Lapu2g00547 504 MobiDBLite consensus disorder prediction 1 24 - -
Lapu2g00547 504 Pfam AP2 domain 244 293 IPR001471 GO:0003700|GO:0006355
Lapu2g00547 504 Pfam AP2 domain 153 201 IPR001471 GO:0003700|GO:0006355
Lapu2g00547 504 MobiDBLite consensus disorder prediction 26 44 - -
Lapu2g00547 504 MobiDBLite consensus disorder prediction 1 63 - -
Lapu2g00547 504 FunFam AP2-like ethylene-responsive transcription factor 152 211 - -
Lapu2g00547 504 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700|GO:0006355
Lapu2g00547 504 PRINTS Ethylene responsive element binding protein signature 284 304 IPR001471 GO:0003700|GO:0006355
Lapu2g00547 504 Gene3D AP2/ERF domain 244 303 IPR036955 GO:0003700|GO:0006355
Lapu2g00547 504 Gene3D AP2/ERF domain 152 211 IPR036955 GO:0003700|GO:0006355
Lapu2g00547 504 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Lapu2g00547 504 MobiDBLite consensus disorder prediction 133 153 - -
Lapu2g00547 504 FunFam AP2-like ethylene-responsive transcription factor 244 304 - -
Lapu2g00547 504 SMART rav1_2 153 215 IPR001471 GO:0003700|GO:0006355
Lapu2g00547 504 SMART rav1_2 245 308 IPR001471 GO:0003700|GO:0006355
Lapu2g00547 504 CDD AP2 153 210 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00547 Lapu-Chr2 4723732 4727623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00547 1 334 AP2-EREBP Transcription Factor Family AT4G36920 69.429 8.11e-138 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lapu2g00547 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00547 K09284 - gmx:100786333 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00547 2 4723732 4727623 Lapu2g00547 2 4723732 4727623 ECH
Lapu2g00547 2 4723732 4727623 Lapu3g01525 3 18061019 18066543 PCT