Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00540 ATGCCTGTGGAGCTCATGATGGGGTATAGGAACGACAGTTTCGCCGAAGAGAATGCGGTTCGTGAAGCTGCGTCCGGGCTAGAGAGCGTCGAGAAGCTCATCAGGTTGCTGTCACACGCTCAACTGCAACAACAACAACTTCAACAACAATCCCACACATCCAATTCCAAGTCTTCCATGGAAATTGAATCCGATTATGGAGCTGTCGCTGACGTGGCCGTTTCCAAGTTCAAGAAGGTGATTTCGCTTCTGGGTCGAACCAGAACCGGCCACGCGCGTTTCAGAAGAGCCCCTGTGCCTCCACCCCCTCCTTCCGAACCCAGATTCTACCGTGCAACGCCGCTGCAGCAGATCCCGCCACCCACCGAACACCCCTTCACCCCAAAAAATGGACTGATTGAGACAAAGGAATCTTCCAAGACCATCAATTTTTCCTATTCCAATTCCTTCGTCTCCTCCCTCACCGGCGACACCGACACTAAACAGCCCTCCTCCTCGTCGCCTGCGGCGGCGGCGCCTTTTCAGATCACCAATCTCTCTCAGGTCTCCTCCGCGGGAAAGCCTCCTCTCTCTTCGTCTTCGTTGAAGAGGAAGTGTAGCTCTGAGAACTTGGGTTCTGCCAAGTGTGGCAGTTCCTCTAGCCGGTGTCATTGCTCAAAGAAGAGCAGAAAAATGAGGTTGAAGAGGGTGGTGAGGGTACCAGCAATAAGCTTGAAGATGGCTGATATCCCACCAGATGATTATTCTTGGAGGAAATACGGACAGAAACCCATTAAAGGATCTCCACATCCAAGGGGCTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAACATGTAGAGAGGGCTTTGGATGACCCTTCTATGTTGGTAGTCACCTATGAAGGTGAACACAATCACACACTCTCTGCAGTCGAGGCTACTACTAATCTTATCCTAGAATCATCTTAG 957 0.5141 MPVELMMGYRNDSFAEENAVREAASGLESVEKLIRLLSHAQLQQQQLQQQSHTSNSKSSMEIESDYGAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPPPPPSEPRFYRATPLQQIPPPTEHPFTPKNGLIETKESSKTINFSYSNSFVSSLTGDTDTKQPSSSSPAAAAPFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSAKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAVEATTNLILESS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00540 318 SUPERFAMILY WRKY DNA-binding domain 241 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu2g00540 318 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 310 IPR044810 GO:0003700
Lapu2g00540 318 FunFam WRKY transcription factor 65 228 305 - -
Lapu2g00540 318 Pfam Plant zinc cluster domain 196 242 IPR018872 -
Lapu2g00540 318 SMART WRKY_cls 244 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu2g00540 318 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu2g00540 318 Pfam WRKY DNA -binding domain 246 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu2g00540 318 Coils Coil 30 50 - -
Lapu2g00540 318 Gene3D WRKY domain 229 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00540 Lapu-Chr2 4643895 4646096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00540 1 308 WRKY Transcription Factor Family AT2G24570 42.815 1.80e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu2g00540 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00540 - - gmx:100804089 466.463