Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00536 ATGGAACCAGCTTCAGCTCATTCTTCATCTCAACCTACTCCTCCAGTTTCTAATACCGAAGAACAACACCCAACCAAAGTGTCTGGACAGATTAACAATGCACATGATTCACCATCATCGTTACCTGCTTCTGGCATGTCATTATGGGCAAGAAATCTGAAATTCCCAGGCCTTGGCCTTGGACAAGCACAACAGGATTCACCGACTGAAAACACAGGAATATCAGCTTTTGCTCGCCTGACTGGTGGGCTTGGATTGCGAACGCAGTCAAAAGAAACTGCTGCTCCAGTCAATTCAGGACCTGAGCAATCTAATTTGATTGAATCCTTCACCAAAGGGCTGGTGGACTCTTCCAAGAGTGCAGTTAAAGCTGTCCAGGTCAAAGCACGCCATATTGTCTCTCAAAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGATATGACATACATCACTGAAAATATTATTGCTATGGGATTTCCGGGTGGTGATTTTAGCTCTGGAATTTTTGGATACATTGAGGGGTTCTATCGCAATCACATGGAAGAAGTGATCAGATTTTTTGAAACACATCATAAGGGCAAATACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGATGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCCCCTATCCAACTTATAGCATCATTCTGTCAAAGTGCATATTCTTGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCACTGTAAAGCTGGTATGGGGAGGACTGGCCTGATGATATGTTGTCTTCTTTTGTTTCTTAAGTTCTTCCCAACTGCAGAGGAAGCCATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAGTCCTCCCTAGTCAAATAAGATATGTAAAATACTTTGAACGGACTTTAACACAATTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCATACTAAGAGGGTTCCGGCTTCACAAGTGCCCTTATTGGGTTCGACCATCTATTACAATTTCTGATCATAAGGGAGTTCTGTTTGCCACAAAACAACATCCCAAAACAAAAGATCTAATGCCAGAAGATTTCTGGATCAGTGCACCGAAGAAAGGAATTGTGGTTTTTGCACTACCAGGAGAACCTGGTCTAGCAGAGTTGGTAGGAGACTTCAAAATTCATTTTAATGATAGACATGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAACCGAAAAATTTTAGATGGTTCAGATTTTGATGGTTTCGACAAGAGAAAGATCCCCGCTCCAGGATTCCGGGTGGAAGTTGTCATGATAGACTATAATGGCACCCTACCTGCAAGGACAAAAGCCAATCCAGCCAGTAAAGGATCTGATGGAAACACAAGCAATGCCCTACCTGGTCCAAAGCCTGCTACATCTGATTCAACTGAGAGTAAACTCCCAAGAAAAGGAGATGATGATGTATTCTCAGACAGTGATGAAGAGGAGACCAGAGATACACAAAGCAAGAAAGCTACAACCGAATACAAATTTATGGAACCTCATCAAGTATCTGAGGGGACAACAGATCATGTAGGGATGTTGACACACACAACGGATCGGTTGTCACTACAGCATGAGGAACACATGCAAAACAATGCTTCTGAAGAATCAACTGCAGATAAACATCATAAAATTCATGCAGGCTATAGCAGCGGAAACGTGGGATCTGTAGGGGAAAGTGACATCAAGGCAATTGCGGCAGATGCTTCAGTTTTTTCATTTGGGGATGAAGATTTTGAAAGTGATTGA 1824 0.4167 MEPASAHSSSQPTPPVSNTEEQHPTKVSGQINNAHDSPSSLPASGMSLWARNLKFPGLGLGQAQQDSPTENTGISAFARLTGGLGLRTQSKETAAPVNSGPEQSNLIESFTKGLVDSSKSAVKAVQVKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDFSSGIFGYIEGFYRNHMEEVIRFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICCLLLFLKFFPTAEEAIDYFNHKRCVDGKALVLPSQIRYVKYFERTLTQFNGEVQPGRRCILRGFRLHKCPYWVRPSITISDHKGVLFATKQHPKTKDLMPEDFWISAPKKGIVVFALPGEPGLAELVGDFKIHFNDRHGDFYCWMNTTMTENRKILDGSDFDGFDKRKIPAPGFRVEVVMIDYNGTLPARTKANPASKGSDGNTSNALPGPKPATSDSTESKLPRKGDDDVFSDSDEEETRDTQSKKATTEYKFMEPHQVSEGTTDHVGMLTHTTDRLSLQHEEHMQNNASEESTADKHHKIHAGYSSGNVGSVGESDIKAIAADASVFSFGDEDFESD* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00536 607 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 123 320 - -
Lapu2g00536 607 SMART PTEN_C2_2 322 450 IPR014020 -
Lapu2g00536 607 ProSiteProfiles C2 tensin-type domain profile. 324 451 IPR014020 -
Lapu2g00536 607 MobiDBLite consensus disorder prediction 458 486 - -
Lapu2g00536 607 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 252 291 IPR000387 GO:0016311|GO:0016791
Lapu2g00536 607 MobiDBLite consensus disorder prediction 506 521 - -
Lapu2g00536 607 ProSitePatterns Tyrosine specific protein phosphatases active site. 254 264 IPR016130 GO:0016311|GO:0016791
Lapu2g00536 607 Gene3D Protein tyrosine phosphatase superfamily 123 320 IPR029021 -
Lapu2g00536 607 MobiDBLite consensus disorder prediction 555 581 - -
Lapu2g00536 607 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 143 314 IPR029021 -
Lapu2g00536 607 CDD PTP_PTEN 148 312 IPR045101 GO:0016791
Lapu2g00536 607 MobiDBLite consensus disorder prediction 555 572 - -
Lapu2g00536 607 MobiDBLite consensus disorder prediction 1 45 - -
Lapu2g00536 607 MobiDBLite consensus disorder prediction 457 534 - -
Lapu2g00536 607 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 115 566 - -
Lapu2g00536 607 ProSiteProfiles Phosphatase tensin-type domain profile. 138 317 IPR029023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00536 Lapu-Chr2 4596197 4614622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00536 34 607 Protein tyrosine phosphatase (PTP) family AT3G19420 61.953 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00536 K01110 - gmx:100801622 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00536 2 4596197 4614622 Lapu2g00536 2 4596197 4614622 ECH
Lapu2g00536 2 4596197 4614622 Lapu7g02330 7 39526533 39534892 PCT