Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00534 ATGCCTCACCCACCCTCACCCTCTTTCCTTCTCTGTCATGAACAACACTCCTCTTTCCTACAACATTCTCCCACTCTCATCACCACCCCGTCTTCAACTTCCATTTTTTCCGACAACCACTTCTTCTCCCAACACGACCACCTTCTCTCTCTACTCTCCAAAGAGACCTCAACGCATTTCACTCTCACCCCTTGCCACCACGTCGTACGCTGGATTTCCACACTTTCCCACTTCCACGGTTTTGCTCCTCTCACCACCGTTCTCGCCGTTAACTACTTCTTCAGGTTCGTTAGCAGAAGTAGCTTTCTGAGCGAAGACAAACCATGGATGACTCAAGTAGCAGCCGTTGCTTGCGTCTCTCTCGCGGCCAAAGTGGAGGAGACACGAGTGCCGCTTCTTTTGGAGTTGCAAGTGGAGGAATCGAAATTCGTATTTGAAGCGAAGACCATACAGAGAATGGAGCTCCTCGTGTTGTCCACTCTTGAATGGAAAATGAACCCTGTCACCCCAATCTGTTTCTTTCAGCACTTTCTCACAAGGCTTGCTTTAAAGCGTCACTTGCATTGGGAATTTCTGTGTGGGTGCCAACATGTTCTTCTCTCTGTCATTGCCGATTCAAGAGTTATGAGTTACCTTCCTTCTACATTGGCGGCTGCTATAATGATCCACGTTATTGAAGAGATTGAACCATTGAATGCTACGGAGTACCGTAAACAGCTTCTTGCTTTACTCAAAAGTAGTGAGGAGCAAGTGAATGAGTGCTACAAACTGATGCTGGGACTATTAGTTTGCCGTGAAGGGATTCAAAATCCTGGTCAGAGGCGCAAACGTTTGTCTGAGCCTAGTAGCCCTGATGGGGTCATAGATGCATCTTTCTGTTGTGAAAGTTCAAATGATTCATGGTCAGTGGCATTACTTTCTGTGGAGCCAGAGTTTAAGAGGAGAAAACCTCAGGACCAGCAGATGCGTTTGCCTTCAGTGAATCGAGTGTCTATTGATGTTCTAAATATTCCTCGTTAA 1020 0.4667 MPHPPSPSFLLCHEQHSSFLQHSPTLITTPSSTSIFSDNHFFSQHDHLLSLLSKETSTHFTLTPCHHVVRWISTLSHFHGFAPLTTVLAVNYFFRFVSRSSFLSEDKPWMTQVAAVACVSLAAKVEETRVPLLLELQVEESKFVFEAKTIQRMELLVLSTLEWKMNPVTPICFFQHFLTRLALKRHLHWEFLCGCQHVLLSVIADSRVMSYLPSTLAAAIMIHVIEEIEPLNATEYRKQLLALLKSSEEQVNECYKLMLGLLVCREGIQNPGQRRKRLSEPSSPDGVIDASFCCESSNDSWSVALLSVEPEFKRRKPQDQQMRLPSVNRVSIDVLNIPR* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00534 339 SMART Cyclin_C_2 168 296 IPR004367 -
Lapu2g00534 339 SUPERFAMILY Cyclin-like 150 266 IPR036915 -
Lapu2g00534 339 CDD CYCLIN_AtCycD-like_rpt2 168 258 - -
Lapu2g00534 339 FunFam CYCLIN D32 167 256 - -
Lapu2g00534 339 Gene3D - 67 166 - -
Lapu2g00534 339 SMART cyclin_7 70 159 IPR013763 -
Lapu2g00534 339 Pfam Cyclin, C-terminal domain 168 267 IPR004367 -
Lapu2g00534 339 SUPERFAMILY Cyclin-like 45 166 IPR036915 -
Lapu2g00534 339 Pfam Cyclin, N-terminal domain 66 166 IPR006671 -
Lapu2g00534 339 CDD CYCLIN_AtCycD-like_rpt1 69 163 - -
Lapu2g00534 339 PANTHER CYCLINS 67 266 IPR039361 -
Lapu2g00534 339 FunFam D6-type cyclin 47 166 - -
Lapu2g00534 339 Gene3D - 167 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00534 Lapu-Chr2 4585090 4587104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00534 39 329 Core Cell Cycle Gene Families AT5G67260 47.742 1.26e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00534 K14505 - gmx:100802683 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00534 2 4585090 4587104 Lapu3g01510 3 17781147 17783246 ECH
Lapu9g02127 9 35992030 35994893 Lapu2g00534 2 4585090 4587104 ECH
Lapu2g00534 2 4585090 4587104 Lapu2g00534 2 4585090 4587104 ECH
Lapu2g00534 2 4585090 4587104 Lapu7g02329 7 39518237 39520719 PCT
Lapu3g01510 3 17781147 17783246 Lapu2g00534 2 4585090 4587104 PCT