Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00525 ATGCCTCCTCAAGACCGCCTCCAGCCGCTGTTAGCGGAGGAACAGGAAGAGACTGCGTACGATGCATCGGAGAAGGTCGTGGTTGTCGGAATCGGTGAGCACGACGGCGACTTGGAGGCGCCGCCGTTCTCGTGGCGGAAGCTGTGGCTGTTTACGGGGCCGGGGTTTCTGATGAGCATCGCTTTTCTGGATCCCGGGAATCTGGAGGGGGATCTTCAGTCTGGGGCCATTGCTGGGTACTCGCTCTTGTGGCTCCTGATGTGGGCCACGGCTATGGGCCTCATTATCCAGCTTCTCTCGGCCCGCCTCGGCGTCGCCACTGGGAGACACTTAGCTGAACTGTGCAGGGAAGAGTATCCCACATGGGCAAGGATTGTGCTCTGGCTTATGACTGAGATTGCTCTTATTGGCTCTGACATTCAAGAGGTTATTGGGAGCGCTATTGCTATCAGGATTCTCAGTAACGGCGTCGTTCCCCTTTGGGCTGGGGTCGTCGTTACAGCTTTGGATTGTTTCATTTTTCTCTTTCTCGAGAACTATGGTGTGAGGAAACTGGAGGCGTTTTTCGCTGTTCTGATTGGTGTAATGGCTCTCGCGTTTGCGTGGATGTTTGGTGAAGCAAAGCCCAACGGTGTAGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAGGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTGTTCTTGCATTCTGCGCTTGTTCAATCAAGACAGGTTGACCCCAGCAAGAAAGGCCGTGTTCAGGAAGCTCTTAATTACTACTCGATAGAGTCCACCATCGCCCTTGCGGTGTCCTTTGTGATTAATATATTTGTTACAACTGTGTTTGCCAAGGGCTTTTACGGTACTGAAATAGCAAACAACATTGGTCTTGTAAACGCAGGGCAGTATCTTCAGGAGAAGTATGGGGGTGGACTTTTCCCAATCCTGTATATATGGGGTATTGGGTTGTTAGCAGCCGGCCAGAGTAGCACAATTACTGGTACATATGCTGGACAATTTATCATGGGGGGTTTTCTGAATTTAAGGTTAAAAAAGTGGGTGAGGGCATTGATTACTCGAAGTTTTGCAATCATTCCAACAATGATAGTTGCTCTTATATTCGATACCTCGGAGGAGTCATTAGATGTTCTGAATGAATGGCTTAATGTTCTCCAATCAGTTCAAATCCCTTTTGCACTCATTCCCTTGCTTTGCTTGGTGTCCAAAGAACAGATAATGGGCAGTTTCAGAATTGGCCCTGTCCTCAAGATTATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAACGGCTATCTATTGCTGGAATTCTTCTCGTCTGAAGTGAATGGAGCAGTGTTTGCCATTATAGTATGTCTATTAACAGCTGCGTATGTTGCATTTGTACTTTACCTTATTTCACGGGCCATTACCTATACACCGTGGCAAAGTTTAACCAGATCTAAAACCGTTGCTACAACAGAGAATTGA 1524 0.4751 MPPQDRLQPLLAEEQEETAYDASEKVVVVGIGEHDGDLEAPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLIIQLLSARLGVATGRHLAELCREEYPTWARIVLWLMTEIALIGSDIQEVIGSAIAIRILSNGVVPLWAGVVVTALDCFIFLFLENYGVRKLEAFFAVLIGVMALAFAWMFGEAKPNGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPSKKGRVQEALNYYSIESTIALAVSFVINIFVTTVFAKGFYGTEIANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRSFAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFRIGPVLKIISWLVAALVIVINGYLLLEFFSSEVNGAVFAIIVCLLTAAYVAFVLYLISRAITYTPWQSLTRSKTVATTEN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00525 507 Hamap Divalent metal cation transporter MntH [mntH]. 34 456 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 PRINTS Natural resistance-associated macrophage protein signature 400 419 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 PRINTS Natural resistance-associated macrophage protein signature 231 254 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 PRINTS Natural resistance-associated macrophage protein signature 127 153 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 PRINTS Natural resistance-associated macrophage protein signature 338 357 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 PRINTS Natural resistance-associated macrophage protein signature 366 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 Pfam Natural resistance-associated macrophage protein 69 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 41 486 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu2g00525 507 NCBIfam Nramp family divalent metal transporter 53 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00525 Lapu-Chr2 4476263 4479785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00525 1 493 Inorganic Solute Cotransporters AT2G23150 78.486 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00525 K21398 - gmx:100807811 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00525 2 4476263 4479785 Lapu2g00525 2 4476263 4479785 ECH
Lapu2g00525 2 4476263 4479785 Lapu3g01494 3 17436762 17441376 PCT