Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00509 ATGTCCAAGGCGCGCGTCTACACCGATGTCAATGTTCTTCGTCCCAAAGAGTATTGGGATTACGAGTCCCTCACCCTTCAATGGGGTGATCAAGATGATTATGAAGTTGTGCGAAAAGTGGGCAGAGGGAAATATAGTGAAGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAATATTTGCGGAGGACCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCATTCCAAAACTCCCAGTTTGATATTTGAGTATGTCAACAGCACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCCTGGATTACTGCCATTCTCAAGGCATTATGCACAGGGATGTCAAGCCTCATAATGTTATGATTGATCATGAATTACGAAAACTTCGCTTGATTGATTGGGGTCTTGCTGAGTTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGATACTTTAAGGGTCCTGAACTTCTAGTTGATTTGCAAGACTATGATTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCCGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGCCATGACAACCATGATCAGCTTGTAAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCTTATCTTAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCGCTTGTTGGAAGACACAGTCGAAAGCCCTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTATCTCCTGAGGCAATTGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACAGGCTAACAGCTAGAGAAGCAATGACTTTAAAATATTTTGCTTCAATAAATATTTATATTTTTGGAAAATTTAGAATTTTCGTCATTTAA 1008 0.377 MSKARVYTDVNVLRPKEYWDYESLTLQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNICGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMTLKYFASINIYIFGKFRIFVI* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00509 335 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00509 335 FunFam Casein kinase II subunit alpha 20 110 - -
Lapu2g00509 335 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Lapu2g00509 335 FunFam Casein kinase II subunit alpha 111 322 - -
Lapu2g00509 335 SUPERFAMILY Protein kinase-like (PK-like) 9 324 IPR011009 -
Lapu2g00509 335 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00509 335 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Lapu2g00509 335 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 322 IPR045216 GO:0004674|GO:0006468
Lapu2g00509 335 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Lapu2g00509 335 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Lapu2g00509 335 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00509 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00509 Lapu-Chr2 4367013 4373014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00509 32 323 Core Cell Cycle Gene Families AT3G48750 31.935 1.53e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lapu2g00509 Pkinase 1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00509 K03097 - gmx:100810748 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00509 2 4367013 4373014 Lapu2g00509 2 4367013 4373014 ECH
Lapu2g00509 2 4367013 4373014 Lapu3g01482 3 17253738 17260078 PCT