Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00498 ATGACAAACATGATTGACAACAATTTCAAGTCTCTTCAAAATACCAAGAAATTAATTCCGATACCGCCTTTTATGCCTAGTTCAATATCAACAAAATCCCCTTGTGAGTATGTGACATTCAATAATTCAAAATCAAAAAGACAAAACAACAATGTCTCTTCATCGACAAAAGATTTGTGGGAACGTCTTTTTTATCAAGGTTATAAAGCAGATGTTTGCATTAATACTGATAAGGGTGACGTTGTATATGCTCATTCTAACATTCTTGGCATGGCTTCTCCCGTATTGAGAGGCATGCTGAAGAAAACAAATCGTCAAGGTCGATGGCGAACAATCTCCATCATTGGGGTTCCACATGATGCAGTTCAAGTTTTTATTCGATATTTGTACACTTATAGTTATGAGAAAGAAGAAATGGATGAATTCGTACTACATTTGTTGGTGTTGTCACATGTATACATGGTTCCCCACTTGAAGTGTGAATGTGAAAAAAAGTTAGAATTGGGTTTACTCAACATAGATAACTTGGTGGACGTATTTCAACTAGCCTTGCTATGTGATGCTCCAAGACTTAGTCTTGTTTGCCACCACAAGATACTAAAAAACTTCAAAGTTGTTTCAGAGTCAGAAGGATGGAAAACAATGAAGTTAAGTCATCCATATTTAGAAAAGGAAATTCTGGAATCAATGATTGATGAAGAAAGTATAAGAAAGGAAAGGATCAAAAAAATGAAGGAAAGAAAGATATATCTACAATTATATGAGGCAATGGAAGCTCTCGTTCATATATGTAAGGATGGTTGTCGAACTATTGGTCCTTATGATAAAGATCTTCGAACAAATCAACCATGTAAGTATTCAGCATGCAATGGATTAGAGTTGCTTGTTCGTCATTTTGCTCAATGTAAGTTGAGAGTTCCTGGAGGTTGTGTTCATTGCAAGAGGATGTGGCAATTATTGGAGTTACACTCTCGATTATGTGTTAATTCTGATGATTGTAGAGTTCCTTTATGCAGGAACTTTAAAGAACGAATATCAAAACAAAGCAAGAAAGACGAAATTAGATGGAAAATATTGGTTGAAAAGATATTGAGAACAAGAGGAATTGGGGTAGCATAA 1119 0.3503 MTNMIDNNFKSLQNTKKLIPIPPFMPSSISTKSPCEYVTFNNSKSKRQNNNVSSSTKDLWERLFYQGYKADVCINTDKGDVVYAHSNILGMASPVLRGMLKKTNRQGRWRTISIIGVPHDAVQVFIRYLYTYSYEKEEMDEFVLHLLVLSHVYMVPHLKCECEKKLELGLLNIDNLVDVFQLALLCDAPRLSLVCHHKILKNFKVVSESEGWKTMKLSHPYLEKEILESMIDEESIRKERIKKMKERKIYLQLYEAMEALVHICKDGCRTIGPYDKDLRTNQPCKYSACNGLELLVRHFAQCKLRVPGGCVHCKRMWQLLELHSRLCVNSDDCRVPLCRNFKERISKQSKKDEIRWKILVEKILRTRGIGVA* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00498 372 Pfam BTB/POZ domain 65 166 IPR000210 GO:0005515
Lapu2g00498 372 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 36 369 IPR044513 -
Lapu2g00498 372 Pfam TAZ zinc finger 254 338 IPR000197 -
Lapu2g00498 372 Gene3D - 172 245 - -
Lapu2g00498 372 SMART TAZ_2 247 339 IPR000197 -
Lapu2g00498 372 SUPERFAMILY POZ domain 49 166 IPR011333 -
Lapu2g00498 372 SUPERFAMILY TAZ domain 247 347 IPR035898 -
Lapu2g00498 372 CDD BACK 172 229 - -
Lapu2g00498 372 ProSiteProfiles BTB domain profile. 70 138 IPR000210 GO:0005515
Lapu2g00498 372 FunFam BTB/POZ and TAZ domain-containing protein 2 172 242 - -
Lapu2g00498 372 SMART BTB_4 70 170 IPR000210 GO:0005515
Lapu2g00498 372 Gene3D TAZ domain 246 366 IPR035898 -
Lapu2g00498 372 ProSiteProfiles Zinc finger TAZ-type profile. 244 341 IPR000197 -
Lapu2g00498 372 FunFam BTB/POZ and TAZ domain-containing protein 2 244 368 - -
Lapu2g00498 372 Gene3D Potassium Channel Kv1.1; Chain A 38 171 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00498 Lapu-Chr2 4217475 4219568 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lapu2g00498 BTB 1.5e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00498 - - var:108334777 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00498 2 4217475 4219568 Lapu2g00498 2 4217475 4219568 ECH