Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00489 ATGGATGCCACGTTGTTTGGGGTAGTGAGATTCCAACATCAACTCCAACCCCAAGCTCAAGCTGATCAAGATCAATCCCTCAACAACTCCACCACCACCAGCAGCTCTCGCTCCTCCAGACAGCAAAACTATCCCTACCCACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAACCCCACCCTCCCTCCACTACACCCACCACCCCCACCCCCACCCCCACCGACCTCTCCTTCTCTCCCACCCGCGACTCCGCCTTCCCTTTCCAGCTCTCCGCCAAGTGGGCCCAGGACATCCTCCTCGAAACCGCACGTGCCGTCTCCGACAAGAACACCACGCGCCTCCAACAACTCATGTGGATGCTCAACGAACTGGGCTCGCCCTACGGCGACACCGACCAGAAACTCGCCTCCTACTTCCTCCAAGCCTTCTTCAGCCGCATCACCCAAGCCGGGGACCGAACGTACCGAACCTTAGCCTCCGCCTCCGAGAAAACATGCTCCTTCGAATCCACGCGCAAGACCGTGCTGAAGTTCCAAGAGGTTAGTCCCTGGACAACCTTCGGACACGTGGCGTCCAATGGTGCCATCTTGGAAGCCTTGGAAGGCGAGCCCAAACTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCTACGCTCTTCGAGGCCTTGGCCACTCGAAACGACGACACTCCGCACCTCCGTCTGACCTCCCTCGTCACCGCCGCCTCCGCGCACAAGGTCATGAAGGAAATCGGCGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCCTTTCAATTCAACGTCGTCCATCACTTAGGTCAACTTTCCGACTTCGATTTCAACGTCTTGGATATAAAAGAAGACGAGGCTTTGGCTATTAACTGTGTGAATACTTTGCATTCGATCTCCGCCCTCGGGAGCCACCGTGACGCGGTGATATCCTCGTTCAGGAGGCTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGACTTGGACGTGGGATTGGAAGGGTTGGAGTTCGTGAAGGGGTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTCGAAGCGTTGGAGGAGAGCTTTCCGCGGACGAGCAACGAGCGGTTGATGCTGGAGCGGGCGGCGGGGAGGGCGGTGGTGGACCTGGTGGCGTGTTCGGCGGCGGATTCGGTGGAGCGGCGGGAGAGGGCGGGGCGATGGACGAGGAGGATGCATGGAGGCGGATTCAATACGGTGGCGTTTAGCGAAGAGGTTTGCGATGACGTGAGAGCGTTGTTGAGGAGGTATAGGGAGGGATGGGCAATGGCACAGTGCTCCGACGCCGGAATATACCTTTCGTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG 1464 0.5738 MDATLFGVVRFQHQLQPQAQADQDQSLNNSTTTSSSRSSRQQNYPYPQEDEECFNFFMDEEDLSSSSSKHYYPYQPHPPSTTPTTPTPTPTDLSFSPTRDSAFPFQLSAKWAQDILLETARAVSDKNTTRLQQLMWMLNELGSPYGDTDQKLASYFLQAFFSRITQAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSLVTAASAHKVMKEIGARMEKFARLMGVPFQFNVVHHLGQLSDFDFNVLDIKEDEALAINCVNTLHSISALGSHRDAVISSFRRLQPRIVTVVEEEADLDVGLEGLEFVKGFEECLRWFRVYFEALEESFPRTSNERLMLERAAGRAVVDLVACSAADSVERRERAGRWTRRMHGGGFNTVAFSEEVCDDVRALLRRYREGWAMAQCSDAGIYLSWKDQPVVWASAWRALT* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00489 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 89 477 IPR005202 -
Lapu2g00489 487 Pfam GRAS domain family 114 484 IPR005202 -
Lapu2g00489 487 ProSiteProfiles GRAS family profile. 103 484 IPR005202 -
Lapu2g00489 487 MobiDBLite consensus disorder prediction 16 46 - -
Lapu2g00489 487 MobiDBLite consensus disorder prediction 67 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00489 Lapu-Chr2 4145642 4147777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00489 43 484 GRAS Transcription Factor Family AT4G37650 63.804 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu2g00489 GRAS 7.9e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00489 - - gmx:100797072 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00489 2 4145642 4147777 Lapu2g00489 2 4145642 4147777 ECH
Lapu2g00489 2 4145642 4147777 Lapu3g01465 3 16880563 16882565 PCT