Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00472 ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAACGTCAAGAAAGGTCCATGGTCACCTGAAGAAGATGCTAAACTCAAGGCTTATATTGAGCACCATGGTACTGGTGGCAACTGGATAGCCTTGCCCCAGAAAATAGGCCTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTAAATTATCTTCGCCCAAACATCAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTTTATGTCAGTATTGGAAGCAGGTGGTCAATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGATATAAAGAACTATTGGAACACTAGGCTAAAGAAGAAGCTTCTTGGCAGACAAAGGAGGGAACAACAAGCTCAAGCTCGCCGTGTCAGCAACAATCAGCAGAAGCAAGATGTGAAAAGAGAAACAGAGAATTTGATAGTAGCTTCTGAAGTCATCAATCAAGTTCCCTATTGGTCTGCAGAATATTCTTCTGTGCCTATGCCAGTGACTGATGTTTCCTTTCAACACTATGGTCTGAACAATCAAACATCTCTCAGAAACTTGATGGTTAATAAACTAGAGGGAATTAGATTTTCCAACGATCATCAGCAGCAGCAGCAGCCATACACCAATGCATGTGAAATTCCCTCCCTGCCAGACCAGGTTTTTCCAGCCATGGTAAATCATGTGGCCGTGGTGAGTAATGAAAACAATAGCATCACTTATCAGCCATCAAATATATTTCAAGGGTTTGAAAACTTCCCGAGTGATTTTTGTGAACTGGTCTGCGTGAACTCGCAACAAATGGATCGATCAATGGAGAGTTTTAACTACGGAATGGAATCCATGGACGTGATGAGCAATGGTGGTAGCACCAACACAACTTCAACAGAAAGCACTAGTTGGGGTGACATGAGCTCCTTGGTGTACTCACCTTTGGTTTCTGACTATGAAGGTTGCCGACAAGGAAATCCTCGAGATGTTGTTGCTTTCGAAGAGTGTAAGTACTTTGGAATGCAGATGCAATAA 1038 0.4335 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEHHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRQRREQQAQARRVSNNQQKQDVKRETENLIVASEVINQVPYWSAEYSSVPMPVTDVSFQHYGLNNQTSLRNLMVNKLEGIRFSNDHQQQQQPYTNACEIPSLPDQVFPAMVNHVAVVSNENNSITYQPSNIFQGFENFPSDFCELVCVNSQQMDRSMESFNYGMESMDVMSNGGSTNTTSTESTSWGDMSSLVYSPLVSDYEGCRQGNPRDVVAFEECKYFGMQMQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00472 345 CDD SANT 71 113 IPR001005 -
Lapu2g00472 345 MobiDBLite consensus disorder prediction 119 143 - -
Lapu2g00472 345 Gene3D - 7 68 - -
Lapu2g00472 345 SMART sant 13 64 IPR001005 -
Lapu2g00472 345 SMART sant 67 115 IPR001005 -
Lapu2g00472 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lapu2g00472 345 Gene3D - 70 147 - -
Lapu2g00472 345 FunFam Transcription factor RAX3 7 68 - -
Lapu2g00472 345 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lapu2g00472 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lapu2g00472 345 PANTHER OS09G0431300 PROTEIN 1 301 - -
Lapu2g00472 345 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lapu2g00472 345 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lapu2g00472 345 CDD SANT 16 62 IPR001005 -
Lapu2g00472 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lapu2g00472 345 FunFam Transcription factor RAX3 70 147 - -
Lapu2g00472 345 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00472 Lapu-Chr2 3960845 3962465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00472 1 314 MYB Transcription Factor Family AT3G49690 47.892 1.58e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu2g00472 Myb_DNA-binding 9.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00472 K09422 - gmx:106795158 603.208