Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00469 ATGGGTTTTGATCACGATGCCAATACCTCTGGCCTTCACCTCGTTCTAGGGTTATCTCTGACTGCTACCACCACTCCATCCACCAAGCCTCATGATCATCATCATCATCATCATCTTTGTGTTATTAAGCCTATGCCAACCAAGCCTTATTCCCCCAATGAACCATCTTTAACATTGGGTTTGTCTGGCGACAGTTGCCACCTGACCAAGCAAGTGCCCAGAAATAACAGCGTGGCCTACAGCAGTAAGGTTTATTGTGAGGATCCTTTTGACATGTCTCGACAGACATCACCTCACAGCGTGGTTTCCTCTTTTTCAACTGGGAGGGTTGTCAAGAGGGAGAGAGATCTTAGCTGTGAAGAGGTAGAGGTGGAGGCAGAGGCAGAAGAGAGGGTCTCTTCAAGAGTGAGCGACGAAGAAGAAGACGGCACCAATGCTAGGAAGAAACTCAGACTCACCAAAGAACAGTCTGCACTTCTAGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAGGCTTTAGCCAGGCAGTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTTCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGAAGGTTAAAGAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTAGCTCAACCTTTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCTTCGTGCGAGAGGCTCGGTGGTGTTAGCGATAACGCTTCCAATAAAAGCTCCTTCACCATTGCTCCCAAGCCTCACTTCTACAACCCCTTTGCCAATCCTTCTGCAGCATGTTGA 879 0.4835 MGFDHDANTSGLHLVLGLSLTATTTPSTKPHDHHHHHHLCVIKPMPTKPYSPNEPSLTLGLSGDSCHLTKQVPRNNSVAYSSKVYCEDPFDMSRQTSPHSVVSSFSTGRVVKRERDLSCEEVEVEAEAEERVSSRVSDEEEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSDNASNKSSFTIAPKPHFYNPFANPSAAC* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00469 292 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Lapu2g00469 292 Gene3D - 151 201 - -
Lapu2g00469 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 274 - -
Lapu2g00469 292 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
Lapu2g00469 292 FunFam Homeobox-leucine zipper protein 18 130 208 - -
Lapu2g00469 292 MobiDBLite consensus disorder prediction 128 146 - -
Lapu2g00469 292 SMART HOX_1 145 207 IPR001356 GO:0003677
Lapu2g00469 292 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Lapu2g00469 292 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Lapu2g00469 292 MobiDBLite consensus disorder prediction 122 146 - -
Lapu2g00469 292 Pfam Homeobox associated leucine zipper 203 237 IPR003106 GO:0006355|GO:0043565
Lapu2g00469 292 SUPERFAMILY Homeodomain-like 145 211 IPR009057 -
Lapu2g00469 292 Coils Coil 209 239 - -
Lapu2g00469 292 CDD homeodomain 147 204 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00469 Lapu-Chr2 3929028 3930993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00469 1 292 Homeobox Transcription Factor Family AT4G37790 58.958 1.20e-96 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu2g00469 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00469 K09338 - gmx:100784129 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00469 2 3929028 3930993 Lapu3g01437 3 16441931 16443726 PCT