Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00467 ATGAAAATCAAGCTCGTACCCGGAGATTCTGCAGGAACTGTTACTGCATTTTATATGAACTCTGACACCGACACTGTACGTGACGAACTGGATTTTGAGTTCTTGGGGAACCGTAGTGGTCAGCCTTACACAGTTCAGACAAATATCTTCGCTCATGGAAAAGGGGAAAGAGAGCAAAGGGTCAACCTCTGGTTTGATCCTTCTGCCGATTTTCACACTTATAGTATCATGTGGAATCATCATCATATTGTGTTCTACGTGGATGATTTTCCCATTAGAGTGTACAAGAACAATGAAGGGAAGGGAATCTCATACCCAAGGATGCAGGCAATGGGAGTGTATTCGACGTTGTGGGAAGCTGATAACTGGGCAACAAGAGGGGGATTGGAGAAAATTGATTGGAGTAAGGCACCCTTTTATGCATATTACAAGGACTTTGACATTGAAGGGTGCCCAACGCCAGGACCTGCAAACTGTGCCTCTAATCAAAGTAACTGGTGGGAAGGGGCTGCATACCAAGCTCTTAATGCCATTGAAGCTCGAAGGTACAGGTGGGTTCGTCTTAACCATATGATCTATGACTACTGCCAAGATAAGTCAAGGTACACAATCATCCCACCAGAGTGCCTTGCCGGCATTTAA 642 0.4502 MKIKLVPGDSAGTVTAFYMNSDTDTVRDELDFEFLGNRSGQPYTVQTNIFAHGKGEREQRVNLWFDPSADFHTYSIMWNHHHIVFYVDDFPIRVYKNNEGKGISYPRMQAMGVYSTLWEADNWATRGGLEKIDWSKAPFYAYYKDFDIEGCPTPGPANCASNQSNWWEGAAYQALNAIEARRYRWVRLNHMIYDYCQDKSRYTIIPPECLAGI* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00467 213 ProSitePatterns Glycosyl hydrolases family 16 active sites. 29 39 IPR008263 GO:0004553|GO:0005975
Lapu2g00467 213 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 143 IPR000757 GO:0004553|GO:0005975
Lapu2g00467 213 CDD GH16_XET 1 209 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lapu2g00467 213 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 1 209 IPR044791 GO:0004553
Lapu2g00467 213 Pfam Glycosyl hydrolases family 16 2 136 IPR000757 GO:0004553|GO:0005975
Lapu2g00467 213 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 162 209 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Lapu2g00467 213 Gene3D - 1 211 - -
Lapu2g00467 213 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 211 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00467 Lapu-Chr2 3915644 3924370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00467 1 211 Glycoside Hydrolase AT5G65730 82.464 4.30e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00467 K08235 - gmx:100791974 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00467 2 3915644 3924370 Lapu3g02609 3 48456237 48458563 PCT