Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00460 ATGATGGAAATCGCGTCCACCAATTACTTCCCTGAACTTGAAATGGAGTATCCAACCTTTCTTGATCAATACCAGATGGATTCTTTTGCATGCCCACTGGATGACTTTGGCTTCGAGTCTTTCTCCGGATCCCCAGAGAGCAATTCATCTTATCAGCTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCCTGATCAGTCCTTCAAAACTTGTGCCAGTGACTTAATTTCCCACAATGTTTCCGCTTCTCCATCCTCCCAACTCATTTCTTTTGGCCACTTTAATGCTTCACCACGTGCTTCCCAGCAATTTCACAGCCTCCACGTGAAGCCTAAAATCGAAAACCCGTCTACTGAGAACATGGACTTTACAGCCTTCGTTTCTCAAGGTTCATATGATGACAAGCGTTTCATGAGTTCTGATAATAGAACGAACCTGGTTGGCATAACCACTAGGAACCCAATCCAAGCCCAAGAGCACGTAATAGCTGAAAGGAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATAGCTCTTTCTGCCGTCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTACAAGAACGCGTGCAAACTCTGGAGGAGGAAACAGCGAAGAGCACAACTGGTTCTTCAGTACTGGTGAAAAGATCTATTCTCTTTGCTGACGATGAAAATTCTGACAGCCACTGCGACCATTCACTCCCTGAAATCGAAGTGAGAGTTTCTGGGAAAGACGTACTCATCAGAACTCAAAGCGATAAACACAGTGGGCGTGCGGCAGTGATACTCAGCGAATTAGAAAAGCTTCATTTCATTGTCCAGAGTAGCAGCCTTTTGCCCTTCGGGAATAACAATATTGATGTAACTATTATTGCTCAGATGAAGGAAAACTACATGGCAGCAAAGGATCTCCTGGGAAGATTACGACAGGCTTTGAAGCAAGTTGATGGGGCCTAA 1002 0.4521 MMEIASTNYFPELEMEYPTFLDQYQMDSFACPLDDFGFESFSGSPESNSSYQLNSESTPNCFPAESPDQSFKTCASDLISHNVSASPSSQLISFGHFNASPRASQQFHSLHVKPKIENPSTENMDFTAFVSQGSYDDKRFMSSDNRTNLVGITTRNPIQAQEHVIAERKRREKLSQRFIALSAVLPGLKKMDKASVLGDAIKYVKQLQERVQTLEEETAKSTTGSSVLVKRSILFADDENSDSHCDHSLPEIEVRVSGKDVLIRTQSDKHSGRAAVILSELEKLHFIVQSSSLLPFGNNNIDVTIIAQMKENYMAAKDLLGRLRQALKQVDGA* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00460 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 222 IPR036638 GO:0046983
Lapu2g00460 333 PANTHER BHLH TRANSCRIPTION FACTOR 14 327 - -
Lapu2g00460 333 CDD bHLH_AtNAI1_like 160 232 - -
Lapu2g00460 333 Gene3D - 153 222 IPR036638 GO:0046983
Lapu2g00460 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Lapu2g00460 333 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
Lapu2g00460 333 Coils Coil 197 217 - -
Lapu2g00460 333 Coils Coil 306 333 - -
Lapu2g00460 333 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00460 Lapu-Chr2 3840002 3842112 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00460 2 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.209 4.20e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g00460 HLH 9.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00460 - - var:108334767 562.377