Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00455 ATGGCTGCAGAGATTGGCCTAGTATCCATGACCCAGATCCAAAAATTATCACAACCCCAACACCCCAAAAACCAACAACCTCAACCAAACCCTAACACCACCACCACCACCCCCTCCTCTTGGATGTGGAACCCTAGGGAACAACTGCAGCAGCAAGAAGAAGATGATGACTCGTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCCTGGGAACCACATGGCCTCCAAGGTCCTACACCTGCACCTACTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCACGCCTCCACCAACCCCCTCCTTCCTCCATCACCGCCACCTCTTCCCTTCCCAGTTCTTCCCCCTACATCAACATCCCTCCTCAAGACCTTGTTGCAAATGCTGGATTGTGCCTCCTCTACCACTTGCCATCAAGCCCTAGTGCACCATTCTTCCCTAATTCCCCCACTACTAATGGCCCTTCTCCTTCTCCCTCCACTCTTCTCTCTATCTCCTCCTATCCTCCAAACAACTTGCTGATGCAGACTTCCTTTAATTTTCCCGGTGCACCCTCATCTGGGACCAATACTGCTACTGTTTCCTCTTTCTGCTATAATAACTCCAGCAAAGTGGAACAATCGACAACTTCTTCCTCTTTTGTTGACAGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGGCAAAAACCAACACCAACCTCATAA 750 0.5227 MAAEIGLVSMTQIQKLSQPQHPKNQQPQPNPNTTTTTPSSWMWNPREQLQQQEEDDDSWEVRAFAEDTRNILGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLHQPPPSSITATSSLPSSSPYINIPPQDLVANAGLCLLYHLPSSPSAPFFPNSPTTNGPSPSPSTLLSISSYPPNNLLMQTSFNFPGAPSSGTNTATVSSFCYNNSSKVEQSTTSSSFVDSHLEELDLELRLGQKPTPTS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00455 249 MobiDBLite consensus disorder prediction 114 128 - -
Lapu2g00455 249 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Lapu2g00455 249 PANTHER OS07G0101800 PROTEIN 53 245 - -
Lapu2g00455 249 Gene3D Classic Zinc Finger 73 123 - -
Lapu2g00455 249 SMART c2h2final6 81 103 IPR013087 -
Lapu2g00455 249 MobiDBLite consensus disorder prediction 10 44 - -
Lapu2g00455 249 MobiDBLite consensus disorder prediction 109 128 - -
Lapu2g00455 249 Pfam C2H2-type zinc finger 81 105 - -
Lapu2g00455 249 MobiDBLite consensus disorder prediction 1 44 - -
Lapu2g00455 249 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Lapu2g00455 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00455 Lapu-Chr2 3801169 3802670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00455 39 245 C2H2 Transcription Factor Family AT4G17810 39.048 2.51e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu2g00455 zf-C2H2_6 2.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00455 - - gmx:100818142 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00455 2 3801169 3802670 Lapu2g00455 2 3801169 3802670 ECH