Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00454 ATGTCTATGGCTGGTTTGGATTTAGGCACGGCTTCGCGCTTCGTTCAAAGTCTTCACAGACCAGACTTCAACCACCACCACCAGCACGAACCCCAGGAAGAGGAAAAACAGTCAGACCCGTTTTCGACCGAAGATGGGGCGCACCAAGCCAGCCCCGGCGATGTGGTCGGGCGGCGGCCTCGAGGGCGGCCGCCGGGGTCCAAGAACAAGCCGAAGCCGCCGGTGATCATCACCAGGGAGAGCGCCAACACGCTCCGCGCGCACATCCTCGAGGTGGGCAGCGGCTGCGACGTGTTCGACAGCGTCGCCAGCTACGCGCAGCGGCGGCAGCGCGGGATCTGTATTTTGAGCGGCAGCGGCACCGTGACGAATGTGAGCCTGCGGCAGCCAGCGGCGTCGGGGGCTGTGGTGACTCTTCACGGGAGGTTCGAGATACTGTCGCTGGCGGGATCGTTCCTCCCTCCGCCGGCACCGCCTGGGGCGACGAGCCTGAGCGTATACCTGGCCGGAGGACAGGGGCAGGTAGTGGGTGGGAGTGTGGTGGGAGAGTTGACCGCGGCGGGACCGGTGATTGTGATCGCAGCGTCGTTTACCAACGTGGCTTATGAACGGTTACCGTTAGAAGAAGAAGAGGAACAGGTTCAGATATCTGGTGGTGCTGGTGTGGGAAATAATAGTAATAGTAATATTATTAATAACAACCCTTTTCCTGATCCTTCTTCGGGACTCCCTTTCTTCAGTTTGCCCATGAATGTTCAGTTGCCGGTGGATGGTTGGGCGGGAAACTCAACTTCACGTTCGCCATTTTGA 810 0.5938 MSMAGLDLGTASRFVQSLHRPDFNHHHQHEPQEEEKQSDPFSTEDGAHQASPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFDSVASYAQRRQRGICILSGSGTVTNVSLRQPAASGAVVTLHGRFEILSLAGSFLPPPAPPGATSLSVYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEEEEQVQISGGAGVGNNSNSNIINNNPFPDPSSGLPFFSLPMNVQLPVDGWAGNSTSRSPF* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00454 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 223 IPR014476 GO:0003680
Lapu2g00454 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 214 - -
Lapu2g00454 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 199 IPR005175 -
Lapu2g00454 269 ProSiteProfiles PPC domain profile profile. 82 218 IPR005175 -
Lapu2g00454 269 FunFam AT-hook motif nuclear-localized protein 85 213 - -
Lapu2g00454 269 MobiDBLite consensus disorder prediction 17 76 - -
Lapu2g00454 269 CDD DUF296 86 169 IPR005175 -
Lapu2g00454 269 Gene3D - 85 217 - -
Lapu2g00454 269 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00454 Lapu-Chr2 3783133 3783942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00454 3 269 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.784 3.56e-95 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00454 - - gmx:100810911 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00454 2 3783133 3783942 Lapu3g01424 3 16092261 16093118 PCT