Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00452 ATGGATTCTCGGGAACCGCACCAGCAGCCGCAACTGCCTAACATTATGGTAGGACCCACCTACGCCTCCATGTTGGCCCCTGCCACCGCCCGATTTCCTTTCATCAACAACAACCACCACCACCAACACAACCCTCCTCCTCCTCCTCCACCTCCTCCTCCCGAGCCTCTCAACATCAACAACAACAATAACAACAACGCGAGCGAGGCTGTGTTGAAGCCGTGCGCGCTCGCAGTTGGTTCTTCGGAGTCCTCCAAGAAGAAGAGGGGCCGGCCCAGAAAGTACTCGCCAGATGGCAACATTGCGTTGGGCCTTGTTCCCACCCATGCCTCCGCTTCTTCTGCGGAACCTCCCGCCAAGAAGCACCGCGGACGCCCCCCTGGTTCCGGCAAGAAGCAGATGGACGCCCTTGGAATCTCTGGAACTGGTTTCACTCCCCATGTTATATCTGCCGAAGCTGGCGAGGACATTGCTGCAAAAATCATGGCTTTCTGTGAGCAAGGACCACGCACAGTTTGCATTCTTTCTGCTATTGGTCCTATCCGCAATGTCACCATTCGACAGCCGCCCTCCGCCTCCTCCCTGTCTGGGCCTGATGTGTCATATGAGGGTGAATTTGAGATCATATCACTTTCAGGTTTTACTCAACAATCTGAAAATAATAGTGGTCATAATGGAATGCGTTCCTTGAATGTGAGTTTAGCAGGTCCTGACGGACGAGTATTGGGTGGCGAAGTTGCTGGAGCTCTTACTGCAGCGTCGGCAGTGCAGGTCGTTGTGGGTAGCTTTATTGCAGATGGAAAAAAGTCTAGCTCGAGTAACCTGAAATCTGGACGTTCAACGACGCCATCATCACAATTATTAACTTTTGGTGCTCCTACGACTCCAACCACTCCTACTTCTCAAGGGCCTTCAACCGAGTCATCTGAGGATAATGAGAACAGTAATTTTATTAAGGGCCCGGGAGGCCCGGGACTCTACAATAATGCCAGTCAGCCTATTCATAACCTGCAGATGTACCATCAACTATGGGCTGGCCATACTCAGCAGTGA 1053 0.5223 MDSREPHQQPQLPNIMVGPTYASMLAPATARFPFINNNHHHQHNPPPPPPPPPPEPLNINNNNNNNASEAVLKPCALAVGSSESSKKKRGRPRKYSPDGNIALGLVPTHASASSAEPPAKKHRGRPPGSGKKQMDALGISGTGFTPHVISAEAGEDIAAKIMAFCEQGPRTVCILSAIGPIRNVTIRQPPSASSLSGPDVSYEGEFEIISLSGFTQQSENNSGHNGMRSLNVSLAGPDGRVLGGEVAGALTAASAVQVVVGSFIADGKKSSSSNLKSGRSTTPSSQLLTFGAPTTPTTPTSQGPSTESSEDNENSNFIKGPGGPGLYNNASQPIHNLQMYHQLWAGHTQQ* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00452 350 MobiDBLite consensus disorder prediction 268 316 - -
Lapu2g00452 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 264 - -
Lapu2g00452 350 MobiDBLite consensus disorder prediction 32 136 - -
Lapu2g00452 350 Gene3D - 146 276 - -
Lapu2g00452 350 ProSiteProfiles PPC domain profile profile. 141 285 IPR005175 -
Lapu2g00452 350 MobiDBLite consensus disorder prediction 268 330 - -
Lapu2g00452 350 CDD DUF296 145 263 IPR005175 -
Lapu2g00452 350 SMART AT_hook_2 120 132 IPR017956 GO:0003677
Lapu2g00452 350 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lapu2g00452 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 263 IPR005175 -
Lapu2g00452 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 39 312 IPR039605 GO:0003680
Lapu2g00452 350 MobiDBLite consensus disorder prediction 42 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00452 Lapu-Chr2 3767854 3772232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00452 86 350 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 43.730 1.33e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00452 - - pvu:PHAVU_002G006700g 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00452 2 3767854 3772232 Lapu3g01422 3 16042636 16047943 PCT