Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00449 ATGCCGGTTCCACTAGTCCCCTACCCTCCACCAGCTTCATACACGCTGCCACCAAATGGTGCGCAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTTTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAACTGTGCCACCTCCTGAAATGGCCCAGTTAGTATGTGGAGGCTGTCACACTTTGCTCATGTACATCCGTGGAGCCACTAGTGTGCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGTAAGATGCTACTCAGGTACCAATATGGAGCAAGATCCGTGAGATGTGCCGTTTGCAGTTTTGTAACATCAGTTGGGGCATCAACAAGCACCACTGAGCAGAAAACCTGA 423 0.4965 MPVPLVPYPPPASYTLPPNGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCKMLLRYQYGARSVRCAVCSFVTSVGASTSTTEQKT* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00449 140 NCBIfam zinc finger domain, LSD1 subclass 24 54 IPR005735 -
Lapu2g00449 140 NCBIfam zinc finger domain, LSD1 subclass 99 128 IPR005735 -
Lapu2g00449 140 NCBIfam zinc finger domain, LSD1 subclass 61 90 IPR005735 -
Lapu2g00449 140 PANTHER PROTEIN LSD1 15 54 IPR040319 -
Lapu2g00449 140 Pfam LSD1 zinc finger 102 126 IPR005735 -
Lapu2g00449 140 Pfam LSD1 zinc finger 64 88 IPR005735 -
Lapu2g00449 140 Pfam LSD1 zinc finger 27 51 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00449 Lapu-Chr2 3748317 3750574 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lapu2g00449 zf-LSD1 8.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00449 - - gmx:100788563 253.062