Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00433 ATGATTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTACTTGACGGAGATAGAAGTTCTGCTGCTGAGATAAGAGAACAGCTTGAGGCCATGGACTATAATGTTTCTACCTTCTATGATGAGAATGAAGCTTTGTCAGCAATCTCGAGTAGTCCTGAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCTGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGACTTCAAAGAACCAGTGCCTGAACACCACGATGAAGTGCATTGCTCTTGGTGCCGTTGAGTTCCTCAGTAAACCACTCTCCGAGGACAAGCTCAAAAATATTTGGCAGCATGTCGTTCACAAGGCATTTAATGCTGGGGCAAATGGTCTGTCTGAATCACTGAAACCTGTCAAAGAATCTGTAGAATCAGTGCTGCAGCTCCAAACAGGCAATGAACAAGATAAAACTCATAAAAGGACGATGTCGATTGATTTAGAGAATGTGTCCAGGTTTGGTGATGATGAAAATGAGCAATCTGTATGTGATAAATATCCGGCTCCTTCAACCCCACAATTGAAACATGGGACACGGTTATTGGATGATGGAGATTGCCATGAGCAGACTAATTTCTCAACAGAAAAAGAAAGCGGGGAATATGATGGGGAATGCAAATCTGTCGAAACTTCATGTGAGAATTTGAATGCTGAAAGTTCTCCTCAACCAACTGAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGGGCGAGAGAGCTGTTCCACTGAATCCACGCAATGAAAAGTTTCTCAGCAATGCAGATGGTAATACTACATCTCCAAAAAAGACGGGAGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCCGAGCTGCATAAAAAATTTGTAAAGGCTGTCGAACAACTAGGTATTGACCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCTGGAGAAGAAGGTCGAAAATGGCATAATCAAAGAGATGCAATGCAAAGGAGCTTTTATCTGCAAAAACCAATCATGGCCTACCCTCCCTATCATTCTAATCAAACACTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGAAATCAAACGGCCGGCGTACAGATCTGGGGGCCTCCTGCATATCCCTTGTGGCATCCTACAGAAAGTTGGAACTGGAAGCCTTATCCGGGGATGCACGTAGATGCTTGGGGATGCCCATTGTTCCCACCTCCTCAAGCTCCTGGTTTTCCCTACAGCCAAAATGTACCTGGATTGCACACTCCTAAAGCAGTGGATTATAGATTCAGCATGCCACGTAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTTAAAGAAGCAATTAATAAACCATGGCTACCATTGCCCTTAGGACTTAAAGCTCCTTCCACGGATAGTGTGTTGGCTGAGCTCTCCAAGCAAGGCATATCCAGCATCCCTCTTGGCAACAAGGGTTCTTCTGCTTCAAAACCCTGCTGA 1686 0.4401 MICTANDLQGWKDFPKGLRVLLLDGDRSSAAEIREQLEAMDYNVSTFYDENEALSAISSSPEGFHVAIVEVSTSCSLGGFKFLENAKDLPTIMTSKNQCLNTTMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNAGANGLSESLKPVKESVESVLQLQTGNEQDKTHKRTMSIDLENVSRFGDDENEQSVCDKYPAPSTPQLKHGTRLLDDGDCHEQTNFSTEKESGEYDGECKSVETSCENLNAESSPQPTEPEETLIKEEEDFANGSKGERAVPLNPRNEKFLSNADGNTTSPKKTGVLNDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPGEEGRKWHNQRDAMQRSFYLQKPIMAYPPYHSNQTLSPAPIYPMWGQPGNQTAGVQIWGPPAYPLWHPTESWNWKPYPGMHVDAWGCPLFPPPQAPGFPYSQNVPGLHTPKAVDYRFSMPRSSFEHHPAEEVVDKVVKEAINKPWLPLPLGLKAPSTDSVLAELSKQGISSIPLGNKGSSASKPC* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00433 561 SUPERFAMILY CheY-like 16 134 IPR011006 -
Lapu2g00433 561 SUPERFAMILY Homeodomain-like 315 372 IPR009057 -
Lapu2g00433 561 MobiDBLite consensus disorder prediction 287 302 - -
Lapu2g00433 561 Gene3D - 312 373 - -
Lapu2g00433 561 NCBIfam myb-like DNA-binding domain, SHAQKYF class 316 371 IPR006447 GO:0003677
Lapu2g00433 561 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Lapu2g00433 561 FunFam Two-component response regulator-like APRR2 17 142 - -
Lapu2g00433 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
Lapu2g00433 561 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
Lapu2g00433 561 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Lapu2g00433 561 SMART REC_2 18 128 IPR001789 GO:0000160
Lapu2g00433 561 FunFam Two-component response regulator 312 374 - -
Lapu2g00433 561 MobiDBLite consensus disorder prediction 268 302 - -
Lapu2g00433 561 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 549 IPR044825 GO:0003700|GO:0045893
Lapu2g00433 561 Gene3D - 18 145 - -
Lapu2g00433 561 MobiDBLite consensus disorder prediction 187 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00433 Lapu-Chr2 3625449 3632514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00433 1 549 Response Regulator Gene Family AT4G18020 47.938 1.76e-141 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lapu2g00433 Response_reg 1.1e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00433 - - vun:114173738 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00433 2 3625449 3632514 Lapu3g01404 3 15785786 15792617 PCT