Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00428 ATGGCGCTTTATCTTTTCTGTGCTTTTTTTGTTACCACCTTGATTTTCATGCAAACTCTGGCTGATACTTCATGCACCGATTGTTTCATTCATTCTCGAGCAGCATATTATCCAAATTCTGAAGAACACGGTACAGATGTAGGTGCATGCGGGTTTGGTTCCTTTGGTGCTACGGTCAATGGTGGGGATGTATCAGCTGCATCTTCTCTTTACCGAAATGGTATTGGTTGTGGCGCCTGTTACCAGGTGAGGTGTACCAATAGTGCCTATTGCTCAAACAATGGTGTGACTGCAGTTATAACTGACCAAGGTTCAAGTGATAACACAGATTTCATTCTTAGCAAACATGCCTTTAGCCGGATGGCTCAAACCACTGATGCAGCTGCTTCTCTATTAGCCCTTGGCGTGGTTGATATTGAATATAGACGTGTTTCATGCAGCTACCCAGATAAAAATATAACAATCAAGATAGACGAGAGCAGCAATAACCCTTATTATTTGGCTTTTGTGATTTGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTGTGCAAGTTACTGGATAGGAGCCATGGAGCGGTGTGGACTACTACCTCTCCACCAAGTGGACCTTTGTCTTTAAGAATGTTGTTTAGTGATGAAGAAGAAGGAGAAGAAACTTGGGTGGTTCCAGCAAATAATATATCCGGAGACTGGAAGGCTGGAGAAACGTACGATTCAGGGGTACAAGTGAACCAATAG 768 0.431 MALYLFCAFFVTTLIFMQTLADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASSLYRNGIGCGACYQVRCTNSAYCSNNGVTAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVSCSYPDKNITIKIDESSNNPYYLAFVIWYQQGRRDITAVQLCETQNFVCKLLDRSHGAVWTTTSPPSGPLSLRMLFSDEEEGEETWVVPANNISGDWKAGETYDSGVQVNQ* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00428 255 Gene3D - 148 253 IPR036749 -
Lapu2g00428 255 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Lapu2g00428 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Lapu2g00428 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 249 IPR007117 -
Lapu2g00428 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Lapu2g00428 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Lapu2g00428 255 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lapu2g00428 255 CDD DPBB_EXLB_N 30 146 - -
Lapu2g00428 255 SUPERFAMILY Barwin-like endoglucanases 18 150 IPR036908 -
Lapu2g00428 255 PANTHER EXPANSIN-B3 15 252 - -
Lapu2g00428 255 Pfam Lytic transglycolase 67 141 IPR009009 -
Lapu2g00428 255 Gene3D - 17 147 IPR036908 -
Lapu2g00428 255 SUPERFAMILY PHL pollen allergen 151 249 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00428 Lapu-Chr2 3592216 3593669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00428 4 251 Expansin Gene Family AT4G17030 40.161 4.29e-58 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00428 - - gmx:100794009 506.138