Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00416 ATGGCTGTTCAAGCTCAATACCCCTCCAATGTACTCTTCCTAAACTGCAGCAAAAGCGGAAAAGAACCACATGACTATTCTTTGCCAGGAGAACTCCTTGATCATAATCAATCTCCTATGTTATTCAACAACGGAGGTAGTAATTCTCGAAAGAGAGGAAGGGAAACAACAGCAGCTAATGTCATTGCGCCAAACCTTGTCAATTCATTCTCTTTACAATCACAATCTCCACAGCTCATAGACCTCACTCAACTTCATAATCAAAATGTAGTCTCCACGGGGTTAGGCTTATCCTTTGGTGACCAACAGCAAAGACAACAATTACATCATCACCACCAACAACAACAACATGGGTGTCACTCCTCTTCTTTCCTATCTCTGTTATCCGATGGTTTGACCACGCAAATCAAACGACAGCATGACGAAATTGATCAATTCCTTCAAGCGCAGGGCGAGCAATTGAGGCGGGCATTAGCGGAGAAGAGGGAGAGACATTATCGCACGCTGCTCAGGGCAGCGGAGGAGTCGGTGTTGCGACGGCTGAGGGAGAAGGAGGCGGAGGTGGAGAAAGCGACGCGGCGCAACGCAGAGTTGGAGGCACGCGCGGCGCAGCTTGGCGCGGAGGCGCAGCTTTGGCAGGCGAAGGCGAAGGCGCAGGAAGCGACGGCGGTATCGCTGCAGGCGCAGCTGCAGCAGGCCATGATGAGCGGCGAGGACGGCGGGGGAGGGCTATCCTGCGCCGGCGGCGAGGCAGAGGATGCTGAGTCAGCATATGTTGACCCGGAGCGCGTCGGTCCGAAATGCAGAGGGTGCGGAAAACGGGTGGCTTCAGTGGTGGTTTTGCCGTGTCGCCACCTATGCATCTGCCCTCAGTGCGACACACATTTTCGGGCGTGTCCCGTTTGCCTCACCGTTAAAAATTCAACCGTTCAAGTCTATCTATCTTAA 948 0.5295 MAVQAQYPSNVLFLNCSKSGKEPHDYSLPGELLDHNQSPMLFNNGGSNSRKRGRETTAANVIAPNLVNSFSLQSQSPQLIDLTQLHNQNVVSTGLGLSFGDQQQRQQLHHHHQQQQHGCHSSSFLSLLSDGLTTQIKRQHDEIDQFLQAQGEQLRRALAEKRERHYRTLLRAAEESVLRRLREKEAEVEKATRRNAELEARAAQLGAEAQLWQAKAKAQEATAVSLQAQLQQAMMSGEDGGGGLSCAGGEAEDAESAYVDPERVGPKCRGCGKRVASVVVLPCRHLCICPQCDTHFRACPVCLTVKNSTVQVYLS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00416 315 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 312 IPR017066 -
Lapu2g00416 315 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 253 314 - -
Lapu2g00416 315 CDD mRING-HC-C3HC5_CGRF1-like 266 302 - -
Lapu2g00416 315 PIRSF SBP1_RNase_bind 1 315 IPR017066 -
Lapu2g00416 315 Coils Coil 171 215 - -
Lapu2g00416 315 ProSiteProfiles Zinc finger RING-type profile. 268 302 IPR001841 -
Lapu2g00416 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 315 IPR013083 -
Lapu2g00416 315 MobiDBLite consensus disorder prediction 24 54 - -
Lapu2g00416 315 MobiDBLite consensus disorder prediction 37 54 - -
Lapu2g00416 315 Pfam Zinc finger, C3HC4 type (RING finger) 267 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00416 Lapu-Chr2 3397800 3400489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00416 268 304 Miscellaneous Gene Families AT2G21380 37.838 8.54e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00416 K19042 - gmx:100797727 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00416 2 3397800 3400489 Lapu2g00416 2 3397800 3400489 ECH
Lapu2g00416 2 3397800 3400489 Lapu3g01391 3 15568958 15572082 PCT