Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00414 ATGAACTGCTTCTTCTTCAAAAACAAATCAAAATCCCACCCAGAACTCCCAAAGGGACGGAAGAAGAAAAGTCAGGTGGTAAATCGAGCACCAAAGTCCCCCGGTTCGGCACCATCGCCGAGGAGCATAAAAGAATTGTACAAAGAGAAGGAACATAGTTTCAGAATTTTCAGTTTGAAAGAGCTGGTAAATGCAACAAATGGTTTCAATAGAATGCTTAAGATTGGAGAAGGTGGTTTTGGGAACGTGTACAGGGGAACAATTGCTCCTCGCCCTGAAGATGGAGCTGATCCAATTGTGGTAGCAATAAAAAAACTTAACACGCATGGCTTGCAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCGTTGTTAGCCACCCTAATTTGGTTAAGCTTCTGGGATACTGCTCTATAGACAGTGAAAGAGGAATCCAACGGTTGTTGGTATACGAGTTCATGTCTAACAGGAGTCTGGAAGATCATCTTTTCAGTCTTTCTTTGCCTCCTTTGCCTTGGCCAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTGGATTATCTACATAACGGATTGGAGATTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTGTTATTGGACAAGCAATTTCATCCCAAACTTTCAGATTTTGGTCTTGCTAGGGAGGGCCCAACAGGTGATAAGACTCATGTATCTACAGCGGTATTGGGGACAAAGGGATATGCTGCTCCAGAGTATGTTCAGACGGGTCATCTCAAAGTTCAGAGTGATATTTGGAGTTTCGGTGTGGTGCTTTATGAGATCCTCACAGGGAGACGTGCATTGAATAGAAAGCATCCAATAGGGGAACAAAAGCTTATAGAATGGGTTAAAAATTACCCTGCTAAGAGTAGCAGGTTCAACACGATCATTGACCCACGTCTCAAGAACCAATATTCTCTTGGTGCAGCTCGGAAAGTAGCCAACTTGGCAGATTGCTGCTTGAAGAAGAATCCTGAAGACAGACCCTCCATGAGTCAGATAGTGGAAAGCTTGAAGCAAGCATTGCAGGATTCAAAAACCAAAAACACTTGA 1092 0.4332 MNCFFFKNKSKSHPELPKGRKKKSQVVNRAPKSPGSAPSPRSIKELYKEKEHSFRIFSLKELVNATNGFNRMLKIGEGGFGNVYRGTIAPRPEDGADPIVVAIKKLNTHGLQGHKEWLAEVQFLSVVSHPNLVKLLGYCSIDSERGIQRLLVYEFMSNRSLEDHLFSLSLPPLPWPTRLQIMLGAAQGLDYLHNGLEIQVIYRDFKSSNVLLDKQFHPKLSDFGLAREGPTGDKTHVSTAVLGTKGYAAPEYVQTGHLKVQSDIWSFGVVLYEILTGRRALNRKHPIGEQKLIEWVKNYPAKSSRFNTIIDPRLKNQYSLGAARKVANLADCCLKKNPEDRPSMSQIVESLKQALQDSKTKNT* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00414 363 ProSitePatterns Protein kinases ATP-binding region signature. 75 105 IPR017441 GO:0005524
Lapu2g00414 363 Gene3D Phosphorylase Kinase; domain 1 49 155 - -
Lapu2g00414 363 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 363 - -
Lapu2g00414 363 Gene3D Transferase(Phosphotransferase) domain 1 156 363 - -
Lapu2g00414 363 SUPERFAMILY Protein kinase-like (PK-like) 51 351 IPR011009 -
Lapu2g00414 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Lapu2g00414 363 ProSiteProfiles Protein kinase domain profile. 69 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00414 363 PANTHER OS01G0588500 PROTEIN-RELATED 29 355 - -
Lapu2g00414 363 CDD STKc_IRAK 75 353 - -
Lapu2g00414 363 MobiDBLite consensus disorder prediction 1 42 - -
Lapu2g00414 363 Pfam Protein tyrosine and serine/threonine kinase 74 351 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00414 Lapu-Chr2 3369783 3372177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00414 1 351 Glycoside Hydrolase AT3G07070 42.382 4.07e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu2g00414 PK_Tyr_Ser-Thr 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00414 - - gmx:100782248 629.787