Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00407 ATGGATCCATGGAACCTTTCAACTTCCAAGTTTCTCTCAAAGCAAGTTGCTTACCCTTCTCATCGCTATGCAGAAGAGATTCCCAACATGGGAACTTCCAGTGGTGTGACCAAGGAGCCCAGAGGTTCACAGATGACAATCTTTTATGATGGCCAAGTTGTTGTCTTTGATGATATTCAAGCTAACAAAGCCAAGGATATCATGTCTTTTGCCAGCACAGGAATGTCCCAAAACCAGAACGACTATGCTTACTCATACCCTGCTCCAATTTCTGCTACTTCCAGTAGACCGTTTCCTTTTTATATGAACATCATCCCTACCACTGCTACAAATTCGGTTCAGGAGCACCCTCAAGCACCATCCAAATCTGTTATATGTGATCTACCTTTGGCTAGAAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATCGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCCAGCTGAATCCATGCCATGGCTCACCTTGGCACCTAAAACGCCACAAGACGAATCTGACTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAA 585 0.4393 MDPWNLSTSKFLSKQVAYPSHRYAEEIPNMGTSSGVTKEPRGSQMTIFYDGQVVVFDDIQANKAKDIMSFASTGMSQNQNDYAYSYPAPISATSSRPFPFYMNIIPTTATNSVQEHPQAPSKSVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALNKPAESMPWLTLAPKTPQDESDSDSSSSFVLF* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00407 194 SMART tify_2 38 73 IPR010399 -
Lapu2g00407 194 Pfam tify domain 40 72 IPR010399 -
Lapu2g00407 194 ProSiteProfiles Tify domain profile. 38 73 IPR010399 -
Lapu2g00407 194 MobiDBLite consensus disorder prediction 178 194 - -
Lapu2g00407 194 MobiDBLite consensus disorder prediction 171 194 - -
Lapu2g00407 194 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 27 165 IPR040390 -
Lapu2g00407 194 Pfam Jas motif 129 154 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00407 Lapu-Chr2 3326521 3327708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00407 32 175 Tify Gene Family AT1G19180 40.000 9.93e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lapu2g00407 tify 5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00407 K13464 - gmx:100800709 300.827