Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00401 ATGGGTAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGACCACCCGAGAAGCCAGTACTATGCAATGCATGTGGGTCTCGATGGAGGACAAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAACAGAAACTGATGATTATGGGGATCAAAGGGTTTCCAGGGTAAAGAGCATATCAAATAAGAAGAGAGAAGTGACATTGCTCAAAAGAAATAATAATCATGATAATATATTATCTGGAGGGTTTGCACCTGAATACAACCAGGGATACCAAATGTTCATAGATGAAGACGTAAGCAACCGATCAAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCACAATTTGGTGCCATGGATGCTAGTGATCTGACAGGTCCTGCTCAGTCAGTGGTTTGGGATGCCATGGTGCCTTCAAAGAAGAGGACATGTGTTGGCCGTCCAAAGCCTTCACCTGTTGAGAAGCTAACAAAAGATTTATGTACTATTCTTCATGAACAACGGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATTAGGCATCCTAGCTATATAGCTCGTGAAGAAGAGTCTGAGGCTAGTTCCTTTTCAGTTGATAATAAACAATGCCCAACGAGTGAGTCATATTCTTGTTTTGGTTCCATTCTAATGCATGATGGTTCTAGTTACTTGAAGCCATCATCTCTGGAAGTTGAAAAGATCAGGAACTATACTGGCCAAGGAAAGCAGCCGGAGCAACATAAAAGTGAAAAGTCTCAACTTGAAAGAGTACAAATCCTTGGCAGTCATGAATCACCGCTGTGCTCTATAGATTTAAATGATATAGTAAACGATGAAGAGTTTTTGAGAGTCTTGACAAATGAAGAGCAGCAACAGTTACTGAAGTTACTTCCCGTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAGTCATGTTCAATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAAGGAGTTTTTGATATCTCTTTATTGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGACTTGTGCTATCCAATCTCTCAAAGTCAAAATGGGTAGAACACTATAATTGTCTCAAGAAATGTAAAAACAAAGCTGGAAAATTGGATTCTTTTGCATCTGCTGGTACAGCATCAACTAATGTTGGGAACAGCAAGGCATCAACTAATGTTGCAAACAAGAGAACGCGTGACAGCAGAAATCAAAACTTTCCAGAACTGAATACAGTAATGAGAAGCCCCAAAAGAATGATCACAAGGGCTGGCTGTGAGGGCAAAGAAGCTGTAGAAGATGGTGCTTGCTATAGTCCAAAAAGCCTATTTGCTTTGCCTCCTGATGCTAGTTCACTCATGCTTGGTTCTTTAAACTTTGTGGAGGAGATTAGTGATCAGGATCTGCTGCTAGAGGTGCCATCTAACACTTCTTTCCCGCAGGCAGAGCTATTGCTCCCAAGTGTAAGCCTTGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGTCTACTCACATCTTAATCATCATTAA 1644 0.4142 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDYGDQRVSRVKSISNKKREVTLLKRNNNHDNILSGGFAPEYNQGYQMFIDEDVSNRSSSGSAISNSESCAQFGAMDASDLTGPAQSVVWDAMVPSKKRTCVGRPKPSPVEKLTKDLCTILHEQRSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSYIAREEESEASSFSVDNKQCPTSESYSCFGSILMHDGSSYLKPSSLEVEKIRNYTGQGKQPEQHKSEKSQLERVQILGSHESPLCSIDLNDIVNDEEFLRVLTNEEQQQLLKLLPVVDTAKLPDSLKVMFNSSQFKENLTYFQQLLAEGVFDISLLGAKPEDCKTLKRLVLSNLSKSKWVEHYNCLKKCKNKAGKLDSFASAGTASTNVGNSKASTNVANKRTRDSRNQNFPELNTVMRSPKRMITRAGCEGKEAVEDGACYSPKSLFALPPDASSLMLGSLNFVEEISDQDLLLEVPSNTSFPQAELLLPSVSLGAQASTSSSSVYSHLNHH* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00401 547 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lapu2g00401 547 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lapu2g00401 547 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Lapu2g00401 547 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Lapu2g00401 547 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
Lapu2g00401 547 MobiDBLite consensus disorder prediction 419 438 - -
Lapu2g00401 547 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Lapu2g00401 547 Pfam Asx homology domain 278 399 IPR028020 -
Lapu2g00401 547 Gene3D - 285 391 IPR038108 -
Lapu2g00401 547 PANTHER OSJNBB0038F03.10 PROTEIN 1 542 IPR044589 -
Lapu2g00401 547 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lapu2g00401 547 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00401 Lapu-Chr2 3282764 3289466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00401 1 523 C2C2-Gata Transcription Factor Family AT4G17570 52.612 4.71e-152 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu2g00401 ASXH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00401 - - gmx:100798504 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00401 2 3282764 3289466 Lapu3g01367 3 15192453 15198405 PCT