Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00386 ATGGCAAACCCAAACCCTTTTCAACTTTCTGCTCTCAATCAAATAAAACTGCATCTTCTAGGAGAACTCTCTCCTCTGCCACTCACTCCCTCCTCTAACCTCACCAAAAATAACTTCTCTTTTCTATTTGATGAACAACCAAACCCTACCTCCTCTCAATCAACCTCCCTCTCCTCCCAATCCTCAACTTCTCACTCATCCGCAACACTGGATCCATTTTTCTCTGATTTCTTCGACTTCTCAACCACTTCAGCAGAAAACCACTTCCCCCTCTTCGAAATCGACTCCAAACCCCAAATAGTTGACCTCCAAACCCCGAAACCCCACCCTCAAACATCAACCTCGGAATTCACGTTTCCGACCACACAGGACCGTAAGAAACCTCAATCAAATCGAAAGCCGTCGCTGCAAATCTCTCTCCCGAAAAAGACGGAGTGGATCCAGTTCGGAGAGAGCGAGGTTGCGGGAACCGTGGCGCAGAAGGCGGCGGAAGAGAAGAAACACTACAGAGGAGTTCGACAGAGACCGTGGGGAAAGTTCGCCGCGGAGATCCGCGACCCCAACAAGCGTGGCTCTAGGGTGTGGCTCGGGACGTTCGAGACGGCCCTCGAAGCCGCCAAAGCCTACGACCGAGCGGCGTTTAGGCTTCGCGGCTCCAAAGCCATCCTCAACTTTCCCCTCGAAGCCGGCGCCGATAACCGCAAACGCCAAAGGGTAGAGGAGGAGCCGGTGATAGAAGTCGTTAAAAGGGAAAAGATCGAAGATTCTGACGTCAACTGTATTAGGGATGCTCCTTTAACGCCGTCTAGCTGGCCAGGTTTCTGGGGTTCTGATGCAAACGGAATCTTCGCTGTGCCTCCTTTGTCGCCGTTATCTCCTCATCCTGCGTTGGGTTATCCACAGCTCATGGTTGTGTGA 918 0.5196 MANPNPFQLSALNQIKLHLLGELSPLPLTPSSNLTKNNFSFLFDEQPNPTSSQSTSLSSQSSTSHSSATLDPFFSDFFDFSTTSAENHFPLFEIDSKPQIVDLQTPKPHPQTSTSEFTFPTTQDRKKPQSNRKPSLQISLPKKTEWIQFGESEVAGTVAQKAAEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETALEAAKAYDRAAFRLRGSKAILNFPLEAGADNRKRQRVEEEPVIEVVKREKIEDSDVNCIRDAPLTPSSWPGFWGSDANGIFAVPPLSPLSPHPALGYPQLMVV* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00386 305 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700|GO:0006355
Lapu2g00386 305 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Lapu2g00386 305 MobiDBLite consensus disorder prediction 39 65 - -
Lapu2g00386 305 MobiDBLite consensus disorder prediction 102 136 - -
Lapu2g00386 305 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700|GO:0006355
Lapu2g00386 305 MobiDBLite consensus disorder prediction 105 125 - -
Lapu2g00386 305 CDD AP2 167 226 IPR001471 GO:0003700|GO:0006355
Lapu2g00386 305 SUPERFAMILY DNA-binding domain 168 227 IPR016177 GO:0003677
Lapu2g00386 305 FunFam Ethylene-responsive transcription factor 2 167 228 - -
Lapu2g00386 305 Gene3D AP2/ERF domain 167 228 IPR036955 GO:0003700|GO:0006355
Lapu2g00386 305 Pfam AP2 domain 168 218 IPR001471 GO:0003700|GO:0006355
Lapu2g00386 305 SMART rav1_2 168 232 IPR001471 GO:0003700|GO:0006355
Lapu2g00386 305 PANTHER DNA-BINDING DOMAIN 115 237 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00386 Lapu-Chr2 3180757 3181970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00386 1 305 AP2-EREBP Transcription Factor Family AT4G17490 43.235 7.27e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu2g00386 AP2 5.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00386 K09286 - gmx:100808173 371.318