Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00381 ATGACGGCTGAAAAGGAGGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAACGCTCCACCTCCTCTTCATCTCAATCTCATATCTACTTCCACCTACTCCTCTTCTCCTTCAAGCCACAACCTTCACAAACCCTCTTGGAACGAGGCTTTCGCTTCTTCAGGTGAAGCTGGATCATTCCTCCGCGGAATCGACGTGAACCGGTTACCGTCTGCGGTTGATTGCGAAGAGGAGGCAGGTGTTTCATCTCCAAACAGCACGGTTTCTAGCGTGAGCGAAAAGCGTAGCGAGAGGGAAGCAAATGGGGAAGAAGAAAACGACACAGAGAGAGGTTGTTTCAGAGGCATCAGCGACGAAGAAGAAGGCGAAGCTTGTAGAAAGAAACTTAGACTCTCCAAAGACCAATCAATTATTCTGGAAGAGAGCTTCAAAGAACACAGCACTCTCAACCCGAAACAAAAGTTGGCACTGGCGAAACAGTTGGGTCTTCGAGCAAGACAAGTGGAAGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAACAGACGGAGGTGGACTGCGAATTTTTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAACAGAAGGTTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCACATGACTCCACCCACCACTCTCACCATGTGCCCCTCTTGTGAGCGTGTCGCTGTTCCCCCTTCCTCTGCCGTTGATGCTGCCACGCGTCACCATCACGTGCCCCAAACCCACCCTCGGGCCTTCCCCATTGGCCCATGGGCCACCTCTGCCGCTCCTATTTCACACAGGCCCTTCGATGCCCTCCGTCCCAGATCTTGA 873 0.5155 MTAEKEDLGLSLSLSFPHNAPPPLHLNLISTSTYSSSPSSHNLHKPSWNEAFASSGEAGSFLRGIDVNRLPSAVDCEEEAGVSSPNSTVSSVSEKRSEREANGEEENDTERGCFRGISDEEEGEACRKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSSAVDAATRHHHVPQTHPRAFPIGPWATSAAPISHRPFDALRPRS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00381 290 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Lapu2g00381 290 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Lapu2g00381 290 SMART HOX_1 125 187 IPR001356 GO:0003677
Lapu2g00381 290 Coils Coil 182 219 - -
Lapu2g00381 290 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Lapu2g00381 290 MobiDBLite consensus disorder prediction 93 112 - -
Lapu2g00381 290 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Lapu2g00381 290 Gene3D - 131 181 - -
Lapu2g00381 290 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Lapu2g00381 290 FunFam Homeobox-leucine zipper protein 18 116 188 - -
Lapu2g00381 290 PRINTS Lambda-repressor HTH signature 154 163 IPR000047 GO:0003677
Lapu2g00381 290 PRINTS Lambda-repressor HTH signature 163 179 IPR000047 GO:0003677
Lapu2g00381 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 41 257 - -
Lapu2g00381 290 Pfam HD-ZIP protein N terminus 3 100 IPR006712 GO:0005634
Lapu2g00381 290 MobiDBLite consensus disorder prediction 76 112 - -
Lapu2g00381 290 SUPERFAMILY Homeodomain-like 127 191 IPR009057 -
Lapu2g00381 290 CDD homeodomain 127 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00381 Lapu-Chr2 3140985 3142415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00381 1 290 Homeobox Transcription Factor Family AT5G47370 60.726 3.25e-111 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu2g00381 HD-ZIP_N 7.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00381 K09338 - gmx:100783851 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00381 2 3140985 3142415 Lapu3g01351 3 14935074 14936426 PCT