Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00375 ATGGAAGAGAAGAAGAAAAATGAAGCAGAAGAAGCAAAGAAGAAGAAGAAGAAGAAGAAAAGAGAGAGTGATCAGAAGCATCGAACGTATCGTGGGGTACGCATGCGTCAGTGGGGGAAATGGGTGTCAGAAATAAGAGAGCCCAAAAAAAAGTCCAGAATCTGGCTCGGCACTTTTCCCACACCAGAAATGGCGGCTCGAGCCCACGATGTGGCGGCTCTAACTATCAAAGGCACTTCCGCTTTCCTTAATTTCCCCGAACTAGCCTCACACCTTCCGCGCCCACCCACCACTTCTCCTAAGGATATCCAGGCCGCCGCCGCCGAAGCTGCTGCACTCAATTGTGAGGCCCAGGCCCAGGCCCAAACCCAGATTATGCCCTCCTCGTTCAACGACGGGGATGACGCGTTCTTGAACCTCCCTGATCTCTCAAGTCCAAGTGCAGGTGGGTTTGGTTACTCCGCGTCGTGGCTCGTAGCCGGAGCTGAACATCAAGACTGGGCTTTTCGGCTCGATGACCCACCTTTCCCCTGGGACTCTTCCCTTTAA 549 0.5337 MEEKKKNEAEEAKKKKKKKKRESDQKHRTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALTIKGTSAFLNFPELASHLPRPPTTSPKDIQAAAAEAAALNCEAQAQAQTQIMPSSFNDGDDAFLNLPDLSSPSAGGFGYSASWLVAGAEHQDWAFRLDDPPFPWDSSL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00375 182 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Lapu2g00375 182 MobiDBLite consensus disorder prediction 11 25 - -
Lapu2g00375 182 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Lapu2g00375 182 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lapu2g00375 182 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lapu2g00375 182 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lapu2g00375 182 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Lapu2g00375 182 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Lapu2g00375 182 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lapu2g00375 182 MobiDBLite consensus disorder prediction 1 32 - -
Lapu2g00375 182 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Lapu2g00375 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 143 - -
Lapu2g00375 182 Coils Coil 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00375 Lapu-Chr2 3096540 3097292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00375 6 113 AP2-EREBP Transcription Factor Family AT5G11590 69.444 1.88e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu2g00375 AP2 3.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00375 - - gmx:100817503 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00375 2 3096540 3097292 Lapu3g01345 3 14810288 14811496 PCT