Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00359 ATGGAGCGCCACAAATGCAAGCTCTGTTCCAGAACATTCGCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTTCCTCTTCCCCCCAAACCCCAGCGTCTCCCTCACTCTCTTAATACTTTATCTTCCAATACATCTTCACGTGAAGACTTAGAAGATGATGATGATGACAATGAAGAAGAAGCAAAGGCTCTCATCAACTACGCCTTGCGAGAGAATCCCAAGAAATGTTTCAGGCTCGCAGATCCCGAGTTCGACTCGGGCTCTGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACTCGTCGACGATCCAAGCGCGCCCGCAGGCCCGCCAATTCCCAACCCAAAGCCCGCCCCAAACTCAGCTTCATGGAGTCCCCTGAGCCCGTGAGCTCCGTCTCCGACACTTCCCCCGAGGAAGATGTGGCCATGTGTCTCATGATGCTGTCCAGGGACCGGTGGAGCAAGAACACCAACGTTGTTGTCGACAACCACGTTGTCGAAGACGGAGAAGAGAGATCAGTGGAAGAGATCAAGTTCAGGAGAGTTCGCCGGAAGCACCAGTGCCAGAGTTGCGAGAAGACGTTTCGATCTTCACGCGCATTGGGCAGTCACCGAAGCATTTGCGAAGGGTCGGGTAACGATAGTAAAATCTTCGAATGCCCCTTTTGTTCTAAGGTGTTTGGGTCTGGTCAAGCACTGGGTGGCCACAAGAGATCTCACATGGTACCTTCTTCCTCCTCCACCGCGAATGATTCCACCAGGTTCAAAGACAGCTTCATAGATCTCAACTTGCCTGCTCCAACCGAAGAAGACGACCTCAGCGTTGTTTCTGATGCCCAATTTGATGACTAA 882 0.5283 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPQRLPHSLNTLSSNTSSREDLEDDDDDNEEEAKALINYALRENPKKCFRLADPEFDSGSVVQDRESETESKNPTRRRSKRARRPANSQPKARPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNTNVVVDNHVVEDGEERSVEEIKFRRVRRKHQCQSCEKTFRSSRALGSHRSICEGSGNDSKIFECPFCSKVFGSGQALGGHKRSHMVPSSSSTANDSTRFKDSFIDLNLPAPTEEDDLSVVSDAQFDD* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00359 293 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Lapu2g00359 293 MobiDBLite consensus disorder prediction 91 147 - -
Lapu2g00359 293 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Lapu2g00359 293 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lapu2g00359 293 MobiDBLite consensus disorder prediction 30 66 - -
Lapu2g00359 293 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 291 IPR044303 GO:0006355
Lapu2g00359 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 250 IPR013087 -
Lapu2g00359 293 MobiDBLite consensus disorder prediction 244 263 - -
Lapu2g00359 293 Pfam C2H2-type zinc finger 228 251 - -
Lapu2g00359 293 Pfam C2H2-type zinc finger 3 28 - -
Lapu2g00359 293 Pfam C2H2-type zinc finger 196 215 - -
Lapu2g00359 293 Gene3D Classic Zinc Finger 192 263 - -
Lapu2g00359 293 MobiDBLite consensus disorder prediction 91 109 - -
Lapu2g00359 293 SMART c2h2final6 228 250 IPR013087 -
Lapu2g00359 293 SMART c2h2final6 196 216 IPR013087 -
Lapu2g00359 293 SMART c2h2final6 4 26 IPR013087 -
Lapu2g00359 293 SUPERFAMILY beta-beta-alpha zinc fingers 194 250 IPR036236 -
Lapu2g00359 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00359 Lapu-Chr2 2967857 2968891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00359 1 286 C2H2 Transcription Factor Family AT3G60580 35.604 1.98e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu2g00359 zf-C2H2_6 1.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00359 - - vun:114173003 500.36