Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00350 ATGGAGGAGCGGAATGAGTCACAAGACAACAGAGAACTCTACGCACTTCTCAACTTGTCTCCGGAAGCTTCCGACGAAGAAATCCGCAGAGCGTATCGTCAATGGGCGCAGGCTTATCACCCCGATAAGTACCAAGCTCCTCACATGAAGGATATTGCTACGGAGAATTTTCAACGCATACGTGAAGCGTATGAGATTCTGTCAGATCCACATAAGAGGCAAATATATGATATCTATGGCATGGAAGGTTTGACTTCTGGTTTGGAACTTGGTCCGAAGCTCAATGGAGCTGAAGAGATCAAGGCAGAGCTAGAGAGATTAAAGAAGCTGAAGGAACGGGAAAAATTGGCGGCGCATTTTCTACCTTCTGGTACAATTCTTGCCAATATGTCTTTGCCACGCTATTTAGGCGGTGGTGGTCTCCTCGAAGGAATGGCTATGACAAGTGAAATCCAGTCTCACTTATCCAAGCGCAATGCTTTTACAATTGCTGGTAATTTAGCAGTGAATGGAGGTGAAGGTGGTGGAGCTGCGAATGCTCTATTTAGGCATCAACTTTCAGAAGTTTCGTCAGTAGAGTTTGTGGCTTCCGTTGGTTTGCGTGCACTAATTGGGGTGCAAACAACTCGTAATTTGTCATCACACTCAGCAGCAACAATGGGCGTAGCAATGTCTTTGAGAGATGGTTCATTGAATCTTTCAAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTAATTTGGGACCACAATCATCTATAGCTGTTGGGTGGCAAAAGAAAGATCAGAGAAGGTCTGCCTCTGGAGAATTGAAGTTTGGCACAGGTTTGTTTGAAGTAGCAGTTCATTGTACTCATCGTTTTTCTCCTAAATCTCTTGGCTGCGTTGTGGGAAGAGTTGGGAGTTCTTCCCTTGAGATTGAAGTTGGTGGTGGTAGGAAGTTATCCAAATTCAGCTCAGTGCGGTGGTTGTATATAATAGGAATTCAGGGTATTTCCTGGAAATTTGAACTCTATCGTGGGGGTCAGAAGATAATTCTTCCAATTTTGCTGACAAGGCATCTTAACCCTATGTTTGCTACTGGGGCATTTGTCATTCCTGCATCTCTTTACTTTATTCTAAAGAAATTTCTTATTAAACCTTATTACCTTAGAAGGAGTAAGCAGAAGGCTCTCGAGGAGGAGAAGGAAACTTCTGCTCAGGTTAAGGAAGCAAGGGCTGCAGCAGAGAAAGCTCAGAAATTACAACAAAATGTGGCTAGTAGGAAAAGAAACAGGCAATTAGAAACAGGAGGGCTGGTTATTATGAGAGCACTATATGGAAATCAGATAGTTTTGAACAACTTAAAGTCATCAAGTGAAACAAGTATTGAATCAACTTCTAATGTCATTGATGTTACAATACCTCTGAATTTTCTTGTTAATGATTCTGGCCAACTTAAGCTCCATGAAGGTGTGAAAAAATCAGGCATTATGGGTTTCTGTGATCCATGTCCAGGAAGACCTAAAGAGTTGTTTGTAGAGTACGTTTATGCCGGCAATCAATACCAGGTATTACCAGTTGCTTGTTTTACGATTCAAAATTTTGTTACAAACCTCTCGCATCTGGTTGATCCAAGGGCTAATTCAAAATTCGATTCAGGTTTGGGTTGGTGA 1671 0.4219 MEERNESQDNRELYALLNLSPEASDEEIRRAYRQWAQAYHPDKYQAPHMKDIATENFQRIREAYEILSDPHKRQIYDIYGMEGLTSGLELGPKLNGAEEIKAELERLKKLKEREKLAAHFLPSGTILANMSLPRYLGGGGLLEGMAMTSEIQSHLSKRNAFTIAGNLAVNGGEGGGAANALFRHQLSEVSSVEFVASVGLRALIGVQTTRNLSSHSAATMGVAMSLRDGSLNLSNLWTRQLSETASGHIELNLGPQSSIAVGWQKKDQRRSASGELKFGTGLFEVAVHCTHRFSPKSLGCVVGRVGSSSLEIEVGGGRKLSKFSSVRWLYIIGIQGISWKFELYRGGQKIILPILLTRHLNPMFATGAFVIPASLYFILKKFLIKPYYLRRSKQKALEEEKETSAQVKEARAAAEKAQKLQQNVASRKRNRQLETGGLVIMRALYGNQIVLNNLKSSSETSIESTSNVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGRPKELFVEYVYAGNQYQVLPVACFTIQNFVTNLSHLVDPRANSKFDSGLGW* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00350 556 Coils Coil 94 117 - -
Lapu2g00350 556 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Lapu2g00350 556 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Lapu2g00350 556 SMART dnaj_3 11 72 IPR001623 -
Lapu2g00350 556 SUPERFAMILY Chaperone J-domain 9 83 IPR036869 -
Lapu2g00350 556 Coils Coil 393 430 - -
Lapu2g00350 556 Pfam DnaJ domain 13 77 IPR001623 -
Lapu2g00350 556 CDD DnaJ 12 69 IPR001623 -
Lapu2g00350 556 Pfam DnaJ-like protein C11, C-terminal 386 523 IPR024586 -
Lapu2g00350 556 PANTHER CHAPERONE PROTEIN DNAJ 13 1 524 IPR042162 -
Lapu2g00350 556 Gene3D DnaJ domain 1 90 IPR036869 -
Lapu2g00350 556 PRINTS DnaJ domain signature 52 72 IPR001623 -
Lapu2g00350 556 PRINTS DnaJ domain signature 72 91 IPR001623 -
Lapu2g00350 556 PRINTS DnaJ domain signature 14 32 IPR001623 -
Lapu2g00350 556 PRINTS DnaJ domain signature 32 47 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00350 Lapu-Chr2 2898989 2912483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00350 14 79 C2H2 Transcription Factor Family AT1G74250 44.118 1.12e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00350 K09531 - gmx:100817782 847.81