Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00348 ATGCTCTGCATTTCCCACGCACACCAAATCATTCTATTACCCTTAACACACTCAATTTCCAAAACCCAATTCAACACTACCCATCACCTCCTCAAATCCACCTCCACTCGCTCAGCCTCACGCTTCCACCGCCAACGCCAACACCAACACCACACGCACAACTCAATCTCTCTTCCACTCTCATCAGGAAGCGACTACACCCTTTCCTTCAACTTAGGTTCGCACCCTTCTCAATCCATAACCCTTTACATGGACACAGGCAGCGACCTCGTGTGGCTCCCATGCGCTCCCTTCGAATGCATTCTCTGCGAAGGCAAATTCAACGCCACCACACCCCTCAACGTCACGCGCTCCCACCGCGTCTCCTGCCAATCCCCTGCATGTTCCACTGCACACTCCTCTATGTCCTCCCACGACCTCTGCGCAATCGCACGTTGTCCTCTGGACAACATTGAAACCTTTGATTGCTCTTCCGCCACGTGTCCACCTTTCTACTATGCTTACGGCGACGGAAGCTTCATCGCGCGCCTCTACCGCGATTCTCTATCTATGTCCTCTCTTTTCCTTAAAAACTTCACCTTCGGTTGCGCCCACACCGCACTCGCCGAACCCACCGGCGTCGCTGGTTTCGGTAGGGGCTTGTTGTCCCTCCCTGCGCAACTTGCCACCCTCTCTCCAAACCTCGGTAACCGTTTCTCTTACTGTCTGGTTTCTCACTCCTTCGATAGACAACGAGTTCGCAAACCAAGTCCACTCATTCTCGGCCACTACGACGGTTCCGGCGAGGGTAATGAGTTTGTTTACACCTCCATGCTTCGGAACCCTAAGCATCCTTATTTCTACTGCGTCGGACTCACCGGAATCTCCGTCGGGAATAGGACTATTCCGGCGCCGGAGATGCTGCGGAGGGTGAACCGCAGAGGGGACGGCGGAGTGGTTGTTGACAGCGGAACCACGTTCACGATGTTGCCGGCGAGTTTGTACAACTCGGTGGTGAGTGAGTTCGACCGGCGAGTTGGGCGAGTTCAGGAGCGCGCGAGTACGGTGGAGGAAAAAACGGGTCTTGGACCGTGTTATTTTTTAAAAGGTTTGGCGGAGGTGCCTATGGTGACGTGGCACTTTGTGGGGAATGATTCAGATGTGGTGCTGCCTAGGGGGAATTATTTTTACGAGTTTTTAGACGGCAGTGATGGGGTTAGGAGGAAGGTAGGGTGCTTGATGTTGATGAACGGTGGTGATGACAGTGAGTTGATCGGTGGACCCGGGGCCACACTTGGGAACTATCAACAGCAAGGGTTTGAGGTGGTGTATGACTTGGAAAACCAGCGCGTGGGTTTCGCTAAGAGGCAATGCGCTTCGCTTTGGGATCGCCTCAACAGTGACAAAAACTAG 1392 0.5366 MLCISHAHQIILLPLTHSISKTQFNTTHHLLKSTSTRSASRFHRQRQHQHHTHNSISLPLSSGSDYTLSFNLGSHPSQSITLYMDTGSDLVWLPCAPFECILCEGKFNATTPLNVTRSHRVSCQSPACSTAHSSMSSHDLCAIARCPLDNIETFDCSSATCPPFYYAYGDGSFIARLYRDSLSMSSLFLKNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATLSPNLGNRFSYCLVSHSFDRQRVRKPSPLILGHYDGSGEGNEFVYTSMLRNPKHPYFYCVGLTGISVGNRTIPAPEMLRRVNRRGDGGVVVDSGTTFTMLPASLYNSVVSEFDRRVGRVQERASTVEEKTGLGPCYFLKGLAEVPMVTWHFVGNDSDVVLPRGNYFYEFLDGSDGVRRKVGCLMLMNGGDDSELIGGPGATLGNYQQQGFEVVYDLENQRVGFAKRQCASLWDRLNSDKN* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00348 463 PANTHER OS07G0603500 PROTEIN-RELATED 23 451 - -
Lapu2g00348 463 ProSiteProfiles Peptidase family A1 domain profile. 66 447 IPR033121 -
Lapu2g00348 463 FunFam aspartic proteinase nepenthesin-1 257 456 - -
Lapu2g00348 463 Gene3D Acid Proteases 46 255 IPR021109 -
Lapu2g00348 463 MobiDBLite consensus disorder prediction 35 58 - -
Lapu2g00348 463 Pfam Xylanase inhibitor C-terminal 281 447 IPR032799 -
Lapu2g00348 463 Pfam Xylanase inhibitor N-terminal 66 255 IPR032861 -
Lapu2g00348 463 CDD pepsin_A_like_plant 66 451 IPR034161 -
Lapu2g00348 463 FunFam Probable aspartyl protease At4g16563 56 254 - -
Lapu2g00348 463 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 312 323 IPR001969 GO:0004190|GO:0006508
Lapu2g00348 463 Gene3D Acid Proteases 258 456 IPR021109 -
Lapu2g00348 463 SUPERFAMILY Acid proteases 62 456 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00348 Lapu-Chr2 2888575 2889966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00348 54 454 Miscellaneous Gene Families AT1G44130 23.543 2.49e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00348 - - gmx:100807884 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00348 2 2888575 2889966 Lapu2g00348 2 2888575 2889966 ECH
Lapu2g00348 2 2888575 2889966 Lapu3g01323 3 14531668 14533416 PCT