Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00333 ATGAATACTTTTTCACATGTTCCTCCTGGATTTCGTTTCCATCCCACCGATGAAGAACTTGTTCATTACTACCTCAAGAAAAAGGTAGCTTCTAAAAGGATTGACCTAGATGTGATAAAAAATGTGGATCTCTATAAAATCGAGCCATGGGATCTTCAAGAATTATGCAAAATTGGAAGCCATGAACAAGATGAATGGTATTTCTTTAGTCATAAGGACAAGAAGTACCCAACTGGCACTCGTACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGGAGAGACAAGGCAATTTACTGTAAGCATTGCCTTACTGGAATGAGGAAGACTCTTGTGTTTTACAAAGGAAGAGCCCCTAATGGTCAGAAATCTGATTGGATCATGCATGAGTATCGGCTAGAAACTAATGAAAATGGAACTTCTCAGGTAATTAATTAA 444 0.3829 MNTFSHVPPGFRFHPTDEELVHYYLKKKVASKRIDLDVIKNVDLYKIEPWDLQELCKIGSHEQDEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYCKHCLTGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTSQVIN* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00333 147 FunFam Nac domain-containing protein 86 16 147 - -
Lapu2g00333 147 Gene3D NAC domain 16 146 IPR036093 GO:0003677|GO:0006355
Lapu2g00333 147 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 138 - -
Lapu2g00333 147 ProSiteProfiles NAC domain profile. 7 147 IPR003441 GO:0003677|GO:0006355
Lapu2g00333 147 SUPERFAMILY NAC domain 5 140 IPR036093 GO:0003677|GO:0006355
Lapu2g00333 147 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00333 Lapu-Chr2 2741165 2741686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00333 1 144 NAC Transcription Factor Family AT1G12260 87.500 8.09e-96 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu2g00333 NAM 5.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00333 - - vvi:100242025 291.967