Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00329 ATGGGGAGGCAGCCTTGCTGTGACAAACTTGGAGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAACTGATAAACTTCATTCTCACCAATGGTCAGTGTTGTTGGCGTGCTGTTCCCAAGCTTGCTGGCCTTCGCCGTTGTGGTAAGAGTTGTCGTCTTCGTTGGACTAATTATCTAAGGCCTGACTTGAAGAGAGGCCTCCTCACACAAGCAGAAGAGCAGCTTGTTATTGATCTCCATGCCCATCTCGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGAACAGACAACGAGATTAAAAATCACTGGAACACCCACATCAAGAAAAAGCTCCTTAAGATGGGTATCGATCCTGTTACTCATGAACCTCTCAACAAACAAGCCTCATCCCAAGATAGTTCTTCCCCTGCAGAGCATTTGCCACAAGTTGATAACATCCTTCAGGTTAAGGAAAATGGTGTGGCTCTAAACTCGGAAGAGAATTCCACCACATCACCGGCTGAAAATTCTTCTGGAGAAGAATCCCTTTTGATGGATAGCATTTGCAGTGATGTGTCTTTAATGAACAGCATGTGGTTGGATGAAACTCCTCTTATGGACACATTATGGGACAGTACACCTAAATTAGAGAATGAAAATAATGACACGGGTTTGCCAATGTGGGAGGATAATTGTTCTTGGTTGTTGGACTTCCAGGACTTAGGTACTCGTGATTTTGGTTTGAATTGTTTCAACGAGATTGACTCTAATGCACTGCAAACTATAGGCGTGGACAGAAAAGGGCTTTAG 804 0.4453 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHAHLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQASSQDSSSPAEHLPQVDNILQVKENGVALNSEENSTTSPAENSSGEESLLMDSICSDVSLMNSMWLDETPLMDTLWDSTPKLENENNDTGLPMWEDNCSWLLDFQDLGTRDFGLNCFNEIDSNALQTIGVDRKGL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00329 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu2g00329 267 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lapu2g00329 267 Gene3D - 70 144 - -
Lapu2g00329 267 PANTHER F14D16.11-RELATED 1 173 - -
Lapu2g00329 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu2g00329 267 SMART sant 13 63 IPR001005 -
Lapu2g00329 267 SMART sant 66 114 IPR001005 -
Lapu2g00329 267 FunFam MYB transcription factor 11 67 - -
Lapu2g00329 267 CDD SANT 16 61 IPR001005 -
Lapu2g00329 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu2g00329 267 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu2g00329 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu2g00329 267 Gene3D - 12 67 - -
Lapu2g00329 267 CDD SANT 71 112 IPR001005 -
Lapu2g00329 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu2g00329 267 FunFam MYB transcription factor 70 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00329 Lapu-Chr2 2706875 2709109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00329 1 259 MYB Transcription Factor Family AT4G12350 55.319 1.25e-97 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu2g00329 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00329 K09422 - gmx:100800360 489.189