Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00316 ATGGATCCTATAACAACACACGCCCATTCTCTTCCACTTCCTTTCCACGCAGCAAGAGATCTCCACCTGCACCACCAACACCAGTTTCACTCCTTACAACAAAACACGGAAGACGAGCAAAGCGGAAGCAGCGGAGGCCTAAACCTCGCTCACAAAAGAGAACGCGAAGAAAACAACACCACCAACAGCAATAACAGTGAAGGAAAGGAAGGAGGAGGTGGCGGCTCCGGTGAAACCGAGATTTCAAGAAGACCTCGCGGAAGACCCTCCGGATCTAAGAACAAGCCCAAACCCCCCATCATCATCACGCGTGACAGCGCCAACGCGCTCAAAACGCATGTTATGGAAGTCGCCGACGGCTGCGACATCGTCGACAGCGTCTCCACCTTCGCCCGTCGTCGTCAGCGAGGTGTTTGCATCATGAGCGGCACTGGAACCGTCACCAATGTCACCCTACGCCAACCCGCTTCTTCCGGTGCCGTCGTCACGCTCCACGGAAGGTTCGAGATCTTGTCCCTCGCCGGATCCTTCCTCCCGCCTCCGGCGCCCCCCGCCGCCACCGGTTTGACGATATACCTGGCTGGAGGACAAGGGCAGGTAGTAGGAGGAAGCGTGGTTGGCGCACTCATTGCTTCGGGGCCTGTGGTTATCATGTCAGCTTCGTTCAGCAACGCTGCGTACGAGAGACTTCCGTTGGAAGATGAAGATCCTTCGATGCCACTTCAGGGAGGTTCGATTGGGTCACCCGGCGGTGGCGGTGGCGTTGGTCAACCGCAGACACCTCAGCAGCTTCTGGGGGATTCCACTGCGCCTCTTTTTCACGGTTTGAATCCCAATCTTCTGAATTCCGTTGAGATGCCTTCGGAAAATTTCTGGGGAACGGGTCGCTCTCTTTACTGA 900 0.5633 MDPITTHAHSLPLPFHAARDLHLHHQHQFHSLQQNTEDEQSGSSGGLNLAHKREREENNTTNSNNSEGKEGGGGGSGETEISRRPRGRPSGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVDSVSTFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEDPSMPLQGGSIGSPGGGGGVGQPQTPQQLLGDSTAPLFHGLNPNLLNSVEMPSENFWGTGRSLY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00316 299 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 224 IPR005175 -
Lapu2g00316 299 CDD DUF296 111 178 IPR005175 -
Lapu2g00316 299 MobiDBLite consensus disorder prediction 27 101 - -
Lapu2g00316 299 Gene3D - 110 238 - -
Lapu2g00316 299 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 44 257 IPR014476 GO:0003680
Lapu2g00316 299 ProSiteProfiles PPC domain profile profile. 107 244 IPR005175 -
Lapu2g00316 299 FunFam AT-hook motif nuclear-localized protein 110 237 - -
Lapu2g00316 299 PIRSF ESCAROLA 17 297 IPR014476 GO:0003680
Lapu2g00316 299 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 236 - -
Lapu2g00316 299 MobiDBLite consensus disorder prediction 28 47 - -
Lapu2g00316 299 MobiDBLite consensus disorder prediction 234 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00316 Lapu-Chr2 2598084 2598983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00316 52 296 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 61.798 4.87e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00316 - - gmx:100781436 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00316 2 2598084 2598983 Lapu2g00316 2 2598084 2598983 ECH