Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00304 ATGGCTTCCACTCTTCAAGCTTCTACCTTGCCGTTTGCTTTGGCAGTGAAGTTCTTGTTCATTTTCATGTTCATGGGAAAGCAAGCAATAGCTGGGGGAACTTTTCGACCCAGTCAATGGGCTCTTGCCCATGCCACCTTTTACGGTGATGAGACTGCTTCTGCCACTATGGGAGGAGCATGCGGGTACGGGAATTTATTTCAAAATGGTTACGGGACAGATACGGTGGCTTTGAGTTCTACGTTGTTCAACAATGGTTATGCGTGTGGAACTTGTTATCAGATAAAATGTTACCAATCAAGTGCGTGTTATACAAATGTAGCTTTCACCACAGTGACTGCCACCAATCTTTGCCCTCCTAACTGGGCGCAACCCTCCGATAACGGAGGCTGGTGCAACCCACCACGAGTGCATTTTGACATGGCCAAACCCTCTTTCATGAAAATTGCGCAGTGGAAAGCTGGCATCGTCCCTGTTATGTACCGCAGAGTGCCATGTGTAAGGAAGGGAGGGCTTCGATTCTCTTTTCAAGGAAATGGGTACTGGCTATTGGTGTATGTGATGAACGTGGGAGGTGGAGGAGATATTTCAAGCATGTCGGTTAGAGGAAGCAGAAGTGGATGGATCAGCATGAGCCACAACTGGGGTGCTTCATATCAAGCATTTGCAACTCTTGGTGGCCAAGCTCTTTCCTTCAGGATTACTTCATACACCACCAGGGAAACTATTATTGCTTGGAATGTTGCTCCTTCAAATTGGAACGTGGGACTAACTTATTCCACCACTGTTAACTTCCGCTGA 801 0.4707 MASTLQASTLPFALAVKFLFIFMFMGKQAIAGGTFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTVALSSTLFNNGYACGTCYQIKCYQSSACYTNVAFTTVTATNLCPPNWAQPSDNGGWCNPPRVHFDMAKPSFMKIAQWKAGIVPVMYRRVPCVRKGGLRFSFQGNGYWLLVYVMNVGGGGDISSMSVRGSRSGWISMSHNWGASYQAFATLGGQALSFRITSYTTRETIIAWNVAPSNWNVGLTYSTTVNFR* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00304 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Lapu2g00304 266 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Lapu2g00304 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Lapu2g00304 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Lapu2g00304 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Lapu2g00304 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Lapu2g00304 266 Pfam Lytic transglycolase 75 161 IPR009009 -
Lapu2g00304 266 CDD DPBB_EXPA_N 39 166 - -
Lapu2g00304 266 PANTHER EXPANSIN-A15 19 261 IPR002963 GO:0009664
Lapu2g00304 266 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Lapu2g00304 266 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Lapu2g00304 266 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Lapu2g00304 266 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Lapu2g00304 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Lapu2g00304 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Lapu2g00304 266 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Lapu2g00304 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 171 IPR007112 -
Lapu2g00304 266 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Lapu2g00304 266 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Lapu2g00304 266 SMART dpbb_1 75 161 IPR007112 -
Lapu2g00304 266 Gene3D - 172 266 IPR036749 -
Lapu2g00304 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
Lapu2g00304 266 Gene3D - 27 166 IPR036908 -
Lapu2g00304 266 SUPERFAMILY Barwin-like endoglucanases 39 189 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00304 Lapu-Chr2 2505637 2506783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00304 7 266 Expansin Gene Family AT1G12560 65.385 1.55e-127 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00304 - - gmx:100798322 501.516