Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00294 ATGGACATTCTCAAATCCCCACTCGACCACGATTCAGAAACATCATGCGAAACAGGTTCCCCCACAACACTTCACAGTAGTGGCCATTCAGACGAGGAAGTGATATTAGCGTCATCGCGGCCGAAGAAGCGAGCAGGGCGAAGAGTTTTCAAAGAGACCAGGCACCCGGTGTACCGGGGAGTGCGACGGAGGAACAACAACAAGTGGGTCTGCGAGATGCGAGTTCCCAACAACAACTCCCGGATTTGGCTCGGCACCTACCCAACGCCCGAAATGGCGGCGCGGGCGCACGACGTTGCCGCCCTCGCGCTCCGGGGGAAGTCGGCCTGCCTCAATTTCGCGGACTCCGTGTGGCGCCTGACTGTGCCTGACACCACCGACGCGGAGGAGATACGGCGAGCGGCGGTGGAGGCTGCTGAGGCATTTGTAGGAGATGAGGATGTGAACCAACAGCAGATGAGTGAAGAAATTGAAGAGCCTCTGCGGCTGCAACAAGAAGAGGGGATGTCTGAAGTAGAAGAGTTGCATGATTTGCTTCTGCAAATTGCGAATGAGCCTTTGATGTCTCCTCCTCCTTGTGTGAGAGATGGTAGGGACTGGAATGACGTGGAGATATTTGATGCTGAGGTTTCACTATGGAACTTTTCTATCTGA 654 0.5489 MDILKSPLDHDSETSCETGSPTTLHSSGHSDEEVILASSRPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSVWRLTVPDTTDAEEIRRAAVEAAEAFVGDEDVNQQQMSEEIEEPLRLQQEEGMSEVEELHDLLLQIANEPLMSPPPCVRDGRDWNDVEIFDAEVSLWNFSI* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00294 217 MobiDBLite consensus disorder prediction 13 33 - -
Lapu2g00294 217 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Lapu2g00294 217 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Lapu2g00294 217 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Lapu2g00294 217 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Lapu2g00294 217 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Lapu2g00294 217 MobiDBLite consensus disorder prediction 1 48 - -
Lapu2g00294 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 214 IPR045277 GO:0003700
Lapu2g00294 217 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Lapu2g00294 217 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Lapu2g00294 217 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Lapu2g00294 217 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00294 Lapu-Chr2 2399090 2399743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00294 30 215 AP2-EREBP Transcription Factor Family AT1G12610 49.038 6.17e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu2g00294 AP2 6.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00294 - - gmx:100789097 294.278