Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00285 ATGAACGGCGGCGAGGAGAGAGAAACCGCAGCGTTCCGAGCTCTGGCGGATCGGTGCCGGAGCCTCGAGGAGAAGCAGGCCAAGCTGAGGGAGGAGTTCGATGAGCTACGGCAGAAGAAGCTCACAGTCAGGGACGATAACCATAACGATGACAATAACGAGGTCATTGCTGATTCAACAACCGTCGGTTTTCTCTCCGGTTACTTCTTCTCTGGAAGTCCCTACGCATCCGTGTTGAAATGCATGGGCCACGCCGTTCACGTCCTCAGCGTTCCGTCCGCCGAGATTGTATACTGGAATCATACAGCTGAAACTCTATATGGATGGAGGGACTACGAAATCATTGGCCAAAGAGTAGCTAAAGTCCTAACTGCCGAGGAAAATCATGCATCTCTACAAAAAATTCTGGAAAGTGTGGTTTCAGGAGTTCCATGGTCTGGGAAGTTTCCTTTCAAGAAGAGATCTGGTGAAGTAATTATGGCATTGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAACTGTTTCAAGTGACGCGGCTATATTAAAATCAACAAATTCAGAAAAGCAAGGAACATATAAATCTGGTAACAATGACCAACCTGGAGTACAGAGGTTAAACTTTAAAAGAATTCAGTGGCCTCCACGACCAACGATTGCACCAATGCCACACATTGCTTCATCTGTTTCCAATCTGCAACCTATTTTTTACATCTACCAGGCGTCAAAGCTTCTCCCAGTGCTGCATAGTACTGATGACACAGTTTCCAGGAAAACCTCAACAGATGCAGTTGCAGATGATGAAAAACTAGAGAAGCGTGGCATATATGAAACAAAACCTTATTCCAGACATCTCCGTAAAGAAAACCCAATTGTAACAGAGGTCTCTGGGAAGAATGAGTCTACTGCAGAATTTGGTCAACCTTCTAAAACCGCAGCCAAGCTTCAAGCTGGGGTACCTGCAAAATATGGGAAGGATAATGGAAATATAAAATATAATTGTACAGCTGATAATTCAGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTATACTGCCATTAAATCGATATCAGGATGTTGTTAATGGAGCAGATAAAGGAGAAAATCTTCAAAAATGTAACTCTTCACTTGCAATGAAGAGAGCAGATACAACAGCTTGTGCGTGTAGAGCTTCCACTGTTTCCGAAGATTCTTCTGAGGCTACGACTATGGTGACAGGAGATGAAGTGCAAAAGCAGCAAGAAGGGTCGCAGCTGGCAAGTTCGAGGGATAGTATAGGCAACCATGAAAGTTTGTCTAGCAAAGGGGATAATGAGTCAAACTCTGTTTCAGAGTGTGAAATCCATTGGGAAGATCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCAGTTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAAATTGATATAATGAAGAGATTGAGACACCCTAATGTGTTACTTTTCATGGGGGCAGTATATAGACAGGAAAGGCTTGCCATTGTAACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATCTACATAGGAACAATCAGACATTAGACATCAGAAGACGTCTAAGAATGGCTCTTGATGTAGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATAGAGATCTGAAGTCTTCCAACCTGCTTGTAGATAAAAACTGGACAGTAAAGGTTGGAGATTTTGGCCTGTCTAGGTTGAAGGATTCAACTTTGTTGACTACGAAATCTGGGAGAGGCACCGTAATGACATCACTCGTTTTTTTCACTTTTAAATACAAAACTTCTGACCTGAACAACTGGCCACTCCTCAATGGATGGCCCCTGAAGTCCTTAGAAATGAACCTTCAAATGAGAAGTAATTCCTTGGAACTGTCTGATGTGTTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCCTGGAAAAATTTGAATTCCTTACAGGTCTCTCTCTCCCCGACCCGCATGTAG 2052 0.4254 MNGGEERETAAFRALADRCRSLEEKQAKLREEFDELRQKKLTVRDDNHNDDNNEVIADSTTVGFLSGYFFSGSPYASVLKCMGHAVHVLSVPSAEIVYWNHTAETLYGWRDYEIIGQRVAKVLTAEENHASLQKILESVVSGVPWSGKFPFKKRSGEVIMALVTKTPLYEDGELVGVITVSSDAAILKSTNSEKQGTYKSGNNDQPGVQRLNFKRIQWPPRPTIAPMPHIASSVSNLQPIFYIYQASKLLPVLHSTDDTVSRKTSTDAVADDEKLEKRGIYETKPYSRHLRKENPIVTEVSGKNESTAEFGQPSKTAAKLQAGVPAKYGKDNGNIKYNCTADNSGSNRMNYENDSSGGILPLNRYQDVVNGADKGENLQKCNSSLAMKRADTTACACRASTVSEDSSEATTMVTGDEVQKQQEGSQLASSRDSIGNHESLSSKGDNESNSVSECEIHWEDLQLREEIGQGSYAVVYHGIWNGSDVAVKIDIMKRLRHPNVLLFMGAVYRQERLAIVTELLPRGSLFKNLHRNNQTLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDSTLLTTKSGRGTVMTSLVFFTFKYKTSDLNNWPLLNGWPLKSLEMNLQMRSNSLELSDVFSFGVILWELMTQSIPWKNLNSLQVSLSPTRM* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00285 683 Gene3D PAS domain 71 200 - -
Lapu2g00285 683 CDD STKc_MAP3K-like 467 678 - -
Lapu2g00285 683 MobiDBLite consensus disorder prediction 406 449 - -
Lapu2g00285 683 Gene3D Phosphorylase Kinase; domain 1 490 523 - -
Lapu2g00285 683 Gene3D Transferase(Phosphotransferase) domain 1 524 681 - -
Lapu2g00285 683 NCBIfam PAS domain S-box protein 94 184 IPR000014 -
Lapu2g00285 683 ProSitePatterns Protein kinases ATP-binding region signature. 467 488 IPR017441 GO:0005524
Lapu2g00285 683 Pfam Protein tyrosine and serine/threonine kinase 464 597 IPR001245 GO:0004672|GO:0006468
Lapu2g00285 683 SUPERFAMILY Protein kinase-like (PK-like) 441 675 IPR011009 -
Lapu2g00285 683 CDD PAS 95 183 IPR000014 -
Lapu2g00285 683 SUPERFAMILY PYP-like sensor domain (PAS domain) 93 183 IPR035965 -
Lapu2g00285 683 SMART serkin_6 461 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00285 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 562 574 IPR008271 GO:0004672|GO:0006468
Lapu2g00285 683 Pfam PAS domain 91 183 IPR000014 -
Lapu2g00285 683 ProSiteProfiles PAS repeat profile. 93 143 IPR000014 -
Lapu2g00285 683 MobiDBLite consensus disorder prediction 406 451 - -
Lapu2g00285 683 Gene3D Phosphorylase Kinase; domain 1 447 489 - -
Lapu2g00285 683 Coils Coil 12 46 - -
Lapu2g00285 683 ProSiteProfiles Protein kinase domain profile. 461 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00285 683 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 267 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00285 Lapu-Chr2 2309629 2315796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00285 4 676 MAP Kinase Kinase Kinase AT4G23050 39.024 1.14e-135 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lapu2g00285 PK_Tyr_Ser-Thr 3.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00285 - - vra:106777922 1061.6