Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00284 ATGGGTAAGGCATCCAAATGGTTTCGCGGCCTTCTCGGCCTCAAAAGACCAGACTCGCCGTCCGCCACCCCTCCCAAACCGTCCAAGGAGAAACGACGCTGGACCTTCGTCAAGTCCTACAGAGAAAAGGACCATTCCGCCGTCGACCACCACGCACCACCCACCAACGGAGCCCACTCATCGGGACACGTGGAAAGCGCTGATCCCGACATCGCAGCGCTCACAGCTGCCGTGGCTCGACTCACTGGCACTGTCCGGCGCGCTGTCACCGCCGCCGGAGGCGTTACTCGAGAAGAATGGGCAGCCGTTAAGATTCAAGCCGCGTTTCGAGGCTCTTTGGCAAGGAAAGCACTTCGAGCGTTAAAAGGACTTGTGAAGCTACAGGCATTAGTGAGAGGCCACATTGAGAGGAAGCGCACATCAGAATGGCTTCAAAGAGTCCAAACACTCTTACGTGTTCAGGCCCAACTCCGTGCTGGGCGGGCCCAAACTTTGCACTCCCCTTATTGGAATGCAAAGTCATCCACAGCCCACCTCCATGGTCCAGCAACACCAGAAAAATTTGAAAGCCCCATCAGATCGGAGAGCATGAAAAATGATCACTCACCATCATTGCTGAAGAGAAACAGCTCAAAATCCCGCATGCAGATCAATTTCAGTCAAGAGAAATATGGAAACAGACCAGATGGAGGCATTGATGAACAGTCGTGGCATCAACGAAGATCATGGTCAAGAGCCTGTAGCCTGGACGAAGAAAGATGCCTCAGGATTATAGAAAATGATTCTGTAAAACTACACATGGCATCAAAGCGTAGAAACCAGTTTTACTCCCCTAGCCATGCTTTGGTTAGTGAAGTTCAGTCTTACAGCCCTCTAAAAACGAACGAGGTTGAGGACAACTCATCGTGTGGTGCTGACAATAGTCCTCAAACTTTATCTGCCTCTTCTAAAAACGGTGCCTCCAAAAGAAGCCCTTTTACTCCTACCAAGAGTGATGGCTCAAAAAGCCATGTAAGTGGTTATTCTGAACCTGACTATCCGAGTTACATGGCATACACTGAATCCTCGATGGCGAAGGTAAGATCTTTGAGTGCTCCAAAGCAGAGGCCCCAATACGAGAGGTCCAGTTCTTCTTCTAAAAGGTACTCCCTTTATGATCATGGATTTGGTGACTCAAAGCTGGCCACGCAAAGGGTAGCTGCATTACACGCAAACTTCACTAACAAAGCTTACCCTGGTTCTGGTCGTTTGGACAAGCTTGGGTTACCTGTGCCGTACTATAAATAA 1287 0.4988 MGKASKWFRGLLGLKRPDSPSATPPKPSKEKRRWTFVKSYREKDHSAVDHHAPPTNGAHSSGHVESADPDIAALTAAVARLTGTVRRAVTAAGGVTREEWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGHIERKRTSEWLQRVQTLLRVQAQLRAGRAQTLHSPYWNAKSSTAHLHGPATPEKFESPIRSESMKNDHSPSLLKRNSSKSRMQINFSQEKYGNRPDGGIDEQSWHQRRSWSRACSLDEERCLRIIENDSVKLHMASKRRNQFYSPSHALVSEVQSYSPLKTNEVEDNSSCGADNSPQTLSASSKNGASKRSPFTPTKSDGSKSHVSGYSEPDYPSYMAYTESSMAKVRSLSAPKQRPQYERSSSSSKRYSLYDHGFGDSKLATQRVAALHANFTNKAYPGSGRLDKLGLPVPYYK* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00284 428 PANTHER IQ-DOMAIN 5-RELATED 1 385 - -
Lapu2g00284 428 Pfam Protein of unknown function (DUF4005) 308 385 IPR025064 -
Lapu2g00284 428 MobiDBLite consensus disorder prediction 173 213 - -
Lapu2g00284 428 Pfam IQ calmodulin-binding motif 125 139 IPR000048 GO:0005515
Lapu2g00284 428 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515
Lapu2g00284 428 MobiDBLite consensus disorder prediction 294 345 - -
Lapu2g00284 428 MobiDBLite consensus disorder prediction 294 338 - -
Lapu2g00284 428 Gene3D - 95 147 - -
Lapu2g00284 428 ProSiteProfiles IQ motif profile. 122 149 IPR000048 GO:0005515
Lapu2g00284 428 SMART iq_5 97 119 IPR000048 GO:0005515
Lapu2g00284 428 SMART iq_5 120 141 IPR000048 GO:0005515
Lapu2g00284 428 MobiDBLite consensus disorder prediction 1 65 - -
Lapu2g00284 428 MobiDBLite consensus disorder prediction 25 50 - -
Lapu2g00284 428 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Lapu2g00284 428 MobiDBLite consensus disorder prediction 360 380 - -
Lapu2g00284 428 MobiDBLite consensus disorder prediction 191 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00284 Lapu-Chr2 2301473 2304932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00284 99 426 IQD Protein Family AT4G23060 43.353 9.75e-64 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00284 - - pvu:PHAVU_002G154900g 623.624