LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu2g00272	ATGGTTAGTAACGGCAACAAGAAGGAAAAAGACCTTGAGCTTTTCTTCGAAGATGATATAAACGAAGATGCACAACATGATATTGAAACTGCCAAGTTAGAGAGTGAGGGTGGTAGCAGTGATGAGGAGGAAATAGATACAACACACTGTCACTCTTTCACTTCTCTCCAATGGCCTCAAAGTTACAAAGAGACTACAGATTCTTACACATTTCCAGCAACTCCAAATTTTGATTCACTTCTACGAGTACCCAGTATTATATTTTCCAGCTTTGAAAATCGTTCAAAGCATAACTTGCAAATAGATGGAAAGACTCCTCTCCTCTCTAGTCCTGAAGTCACTACCCAATCAACGTCGTTGAAGGAAGGTTCAGTGCAACAAGGGCATTTAGCAGGCGAATTGCCCATTAGTCGTGGGTGCAGCTTAATTCAAACAATTTTCAATGCAACTAATGTGATGGCTGGAGTCGGCATTCTCTCAACACCTTATACATTGAAAGAAGCTGGTTGGATGAGCATGGTGTTGATGGTTGTTTTTGCTGTCATTTGTTTCTATACAGCCACCCTCATGAGATACTGCTTTGAAAGCAGGGAAGGAATCAATAGCTACCCAGATATAGGAGAAGCTGCATTTGGAACATACGGTCGTATTATAGTATCAATCATCTTGTACACTGAATTATATTCATGTTGTGTAGAATTGATCACCTTGGAAGGAGACAACCTCACTGGACTATTTCCGGGAACATCCTTAGAATTGGGTAGTTTGCAGTTAGATTCTGTGCACTTGTTTGGAATTTTTGCTGCACTTATTTTTATCCCAACTGTTTTGCTGAAGGATCTTCGTATAATCTCTGCACTGTCAGCTGGAGGGGTTTTTGCAACACTGTTGGTTGTTATCTGTGTGTATTGTGTTGGGGTAATGGATGGTGTTGGATTCCATCACAGTGCGAAATTGGTCAACTGGAGTGGCATTCCATTAGCTATTGGTATCCACGGATTTTGCTTTGCAGGACATTCAGTTTTTCCAAATATTTACCAATCCATGGCTGACAAAACACAATTTACTAAAGCACTAATAGTATGTTTTGTATTGTCTGTTGCAATATATGGAGGTGTTGCAGTCATGGGATTCCTTGCGTTTGGCGACGACACTTTGTCTCAAATAACATTAAATTTGCCAAGAAATGTATTTGCTTCCAAGGTTGCAATATGGACAACAGTAGTTAACCCATTCACTAAATATGCTTTGATGTTGAACCCATTAGCAAGAAGTCTGGAGGAGTTGCTACCAGATAGATTCTCAAATAATTATGGCTGTTTCGTTCTTATCAGAATTGCACTTGTTGTATCTACAGTTTGTGCTGCTTTTCTGATTCCTTTTTTTGGGTATGTGATGGCTTTAATTGGCTCTCTCTTCAGTATACTTGTGTCAGTGATATTTCCAAGTTTATGTTTTATGAGAATTGTGGGAAAAAAAGCAACGTATACACAGGTTGCCTTGAGCATGGTAATTGCTGCATTTGGAGTCATTTTTGGAATTCTAGGAACATATTCATCTGTGCTGAATATTGTGAAGAGTTACTGA	1587	0.3926	MVSNGNKKEKDLELFFEDDINEDAQHDIETAKLESEGGSSDEEEIDTTHCHSFTSLQWPQSYKETTDSYTFPATPNFDSLLRVPSIIFSSFENRSKHNLQIDGKTPLLSSPEVTTQSTSLKEGSVQQGHLAGELPISRGCSLIQTIFNATNVMAGVGILSTPYTLKEAGWMSMVLMVVFAVICFYTATLMRYCFESREGINSYPDIGEAAFGTYGRIIVSIILYTELYSCCVELITLEGDNLTGLFPGTSLELGSLQLDSVHLFGIFAALIFIPTVLLKDLRIISALSAGGVFATLLVVICVYCVGVMDGVGFHHSAKLVNWSGIPLAIGIHGFCFAGHSVFPNIYQSMADKTQFTKALIVCFVLSVAIYGGVAVMGFLAFGDDTLSQITLNLPRNVFASKVAIWTTVVNPFTKYALMLNPLARSLEELLPDRFSNNYGCFVLIRIALVVSTVCAAFLIPFFGYVMALIGSLFSILVSVIFPSLCFMRIVGKKATYTQVALSMVIAAFGVIFGILGTYSSVLNIVKSY*	529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu2g00272	528	PANTHER	OS05G0424000 PROTEIN-RELATED	148	509	-	-
	Lapu2g00272	528	MobiDBLite	consensus disorder prediction	23	45	-	-
	Lapu2g00272	528	MobiDBLite	consensus disorder prediction	102	124	-	-
	Lapu2g00272	528	FunFam	Amino acid transporter AVT1A	138	527	-	-
	Lapu2g00272	528	Pfam	Transmembrane amino acid transporter protein	140	520	IPR013057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu2g00272	Lapu-Chr2	2197191	2202473	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu2g00272	54	468	Amino Acid or Auxin Permease AAAP Family	AT2G41190	63.070	0.0	543

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu2g00272	K15015		-	gmx:100816368	857.055