Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00269 ATGACCTGCACCTCCTGTTCCTCCACGCTAGAATCCACTTTACAAGGTGTTCACGGTGTGGTCGAAGCCCGCGTGGGCCTGGCCACCGAAGAGGCCGAAGTCCACTACAACCCAAGTATCCTCCTCACTCCAAACGACCTTCTACAAGCCATTGAAGATTCCGGATATGAGGCCGCGCTCATTAGTTCAAGCGAAGACTTTACCAAGATAGACCTTCACGTGGAAGGCCCTGTAACCGATGACGCTTCCATGGAACAAATACTAGATTCTCTGCGGACACTCCCAGGAGTCCTTGCGGTGGACTTAAATACGGAACTCAGCAAAATATCGGTTTCTTACAAACCGGACGTCACAGGACCCAGAAATTTGATCAACGTGATTGAGCAGACAGGGAATGGGAATTTCAAGGCGAAGATATATCCTACAGAACAAGGACAAAGAAACTCTCTCAGACGCGAGGAAACAAGGCAGTATTATAAATCTTTCTTATGGAGCTTGGTGTTTACTATTCCTGTGTTTCTAACCTCCATGGTGTTTATGTATGTCCCTGTAATTAAGGACCTACTTGATGCAAAAATCGTGAACATGCTTACCGTGGGGGAGGTTGTAGCGTGGGTGCTGTCTACGCCGGTTCAGTTCGTACTCGGCTGGCGGTTTTACTACGGTTCTTACAAATCGTTACGCCGTGGCTCTGCGAACATGGATGTTCTCATTGCGCTGGGGACAAACGCAGCGTATTTTTACTCTGTTTACTCTGTTTTGAGAGCTGCTACTTCTCCGCATTTTGAGGGGAATGAATTCTTCGAGACGAGTGCCATGCTTATTTCGTTCATTCTGCTTGGGAAGTATCTCGAGATCTTGGCGAAGGGGAAAACGTCTGATGCGATTGCCAAGCTCATGAACTTGGCCCCCGACACGGCGGTTTTGCTGACTTTGGACGGTGATGGGAATGTTGTTGGGGAGGAGGAGATTGATAGCAGGTTGGTTCAGAAGAATGATGTGATTAAGGTTGTTCCTGGAGCAAAAGTGGCTTCCGATGGATTTGTTGTGTGGGGGCAGAGTCACGTGAATGAGAGCATGATCACGGGGGAAGCGCGTCCCGTGGCCAAGAGGAAAGGGGACACTGTTATTGGAGGGACTGTGAATGAGAATGGAGTATTGCATGTTAAGGCGACGAGGGTAGGATCTGAGAGTGCTCTTTCTCAGATTGTCCGCCTTGTGGAGTCAGCGCAGATGGCTAAAGCACCTGTGCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTGGTGATTGTGACCTCGTTGACGACTTGGCTTGCCTGGTTTTTGGCTGGAAGATATCATGCTTACCCAAAGTCTTGGATACCGTCTTCAATGGACAGCTTTGAGCTTGCTTTTCAGTTTGGAATATCTGTCATGGTCATAGCCTGCCCTTGTGCTTTGGGTTTAGCGACGCCAACTGCGGTGATGGTTGGCACCGGAGTTGGTGCATCTCAGGGTGTGCTCATCAAAGGAGGTCAGGCATTAGAGAGTGCACATAAGGTGAACTGCATTGTTTTCGATAAGACGGGTACTCTCACTGTCGGGAAACCTGTGATAGTGAGAACAGAACTATTGACAAAAATGGTGCACCGGGAATTCTATGAACTTGTGGCTGCAACCGAGGTGAATAGTGAGCATCCATTGGCCAAGGCCATTGTTGAGTATGCCAAGAAATTTAGAGATGAAGAGAACCCTTCTTGGCCAGAAGCACGAGATTTTATTTCCATTACAGGACACGGAGTAAAGGCCACTGTTTGTAACAAAGAAATAATGGTGGGTAATAAGAGCTTGTTGACTGACCATAACATTGCAATTCCCGTTGTTGCTGAAGGTATGCTTGCTGAAGCCGAAAAGATGGCTCAGACAGGAATTTTGGTATCTATAAATGGGAAAGTGGCAGGAGTTTTAGCAGTATCCGATCCACTGAAACCAGGTGCTCCAGAAGTCATTTCCATTCTCAAATCAATGAAAATCAAGAGCATTATGGTGACTGGGGACAACTTCGGAACGGCTAGTTCTATTGCTAGGGAAGTGGGAATTGAGAATGTTATAGCTGAGGCTAAACCGGATCAAAAAGCAGAGAAAGTGAAAGACTTGCAGGCATCTGGTTACATTGTGGCTATGGTGGGGGATGGTATCAATGATTCGCCTGCACTTGTGGCAGCGGATGTGGGAATGGCGATAGGTGCTGGAACAGACATTGCTATTGAGGCTGCTGATATTGTCCTCATGAAGAGCAACTTGGAAGATGTCATAACTGCTATTGACCTTTCCAGAAAAACACTTTCCCGTATTCGCCTGAATTACGTCTGGGCTCTAGGTTATAACTTACTTGGAATCCCAATTGCTGCTGGAGCTCTTTTCCCTTCAACAAGGTTCAGATTACCACCCTGGATTGCTGGGGCTGCTATGGCTGCCTCCTCCGTCAGCGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAGGAGACCCAGGAAGCTAGACAAGCTTGAGATACGAGGCATAAGCGTCGAGACATCCAGAGATATAGGATGA 2583 0.4743 MTCTSCSSTLESTLQGVHGVVEARVGLATEEAEVHYNPSILLTPNDLLQAIEDSGYEAALISSSEDFTKIDLHVEGPVTDDASMEQILDSLRTLPGVLAVDLNTELSKISVSYKPDVTGPRNLINVIEQTGNGNFKAKIYPTEQGQRNSLRREETRQYYKSFLWSLVFTIPVFLTSMVFMYVPVIKDLLDAKIVNMLTVGEVVAWVLSTPVQFVLGWRFYYGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFEGNEFFETSAMLISFILLGKYLEILAKGKTSDAIAKLMNLAPDTAVLLTLDGDGNVVGEEEIDSRLVQKNDVIKVVPGAKVASDGFVVWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVIVTSLTTWLAWFLAGRYHAYPKSWIPSSMDSFELAFQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVIVRTELLTKMVHREFYELVAATEVNSEHPLAKAIVEYAKKFRDEENPSWPEARDFISITGHGVKATVCNKEIMVGNKSLLTDHNIAIPVVAEGMLAEAEKMAQTGILVSINGKVAGVLAVSDPLKPGAPEVISILKSMKIKSIMVTGDNFGTASSIAREVGIENVIAEAKPDQKAEKVKDLQASGYIVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTLSRIRLNYVWALGYNLLGIPIAAGALFPSTRFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPRKLDKLEIRGISVETSRDIG* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00269 860 NCBIfam heavy metal translocating P-type ATPase 234 834 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lapu2g00269 860 Gene3D - 606 656 IPR023299 GO:0000166
Lapu2g00269 860 Gene3D - 528 605 IPR023299 GO:0000166
Lapu2g00269 860 Gene3D - 289 411 - -
Lapu2g00269 860 CDD HMA 1 59 IPR006121 GO:0046872
Lapu2g00269 860 SFLD p-type atpase 503 777 IPR044492 -
Lapu2g00269 860 CDD P-type_ATPase_Cu-like 160 835 - -
Lapu2g00269 860 Gene3D - 488 782 IPR023214 -
Lapu2g00269 860 SUPERFAMILY Calcium ATPase, transduction domain A 321 407 IPR008250 -
Lapu2g00269 860 ProSiteProfiles Heavy-metal-associated domain profile. 68 135 IPR006121 GO:0046872
Lapu2g00269 860 ProSiteProfiles Heavy-metal-associated domain profile. 1 59 IPR006121 GO:0046872
Lapu2g00269 860 SUPERFAMILY Calcium ATPase, transmembrane domain M 269 793 IPR023298 -
Lapu2g00269 860 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Lapu2g00269 860 PRINTS P-type cation-transporting ATPase superfamily signature 725 744 - -
Lapu2g00269 860 PRINTS P-type cation-transporting ATPase superfamily signature 357 371 - -
Lapu2g00269 860 PRINTS P-type cation-transporting ATPase superfamily signature 521 535 - -
Lapu2g00269 860 PRINTS P-type cation-transporting ATPase superfamily signature 748 760 - -
Lapu2g00269 860 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Lapu2g00269 860 ProSitePatterns E1-E2 ATPases phosphorylation site. 523 529 IPR018303 -
Lapu2g00269 860 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 849 - -
Lapu2g00269 860 FunFam Probable copper-transporting ATPase HMA5 619 782 - -
Lapu2g00269 860 FunFam Copper-transporting ATPase 1, putative 289 411 - -
Lapu2g00269 860 Pfam E1-E2 ATPase 304 499 - -
Lapu2g00269 860 Pfam haloacid dehalogenase-like hydrolase 517 739 - -
Lapu2g00269 860 PRINTS Copper-transporting ATPase 1 signature 162 183 - -
Lapu2g00269 860 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Lapu2g00269 860 PRINTS Copper-transporting ATPase 1 signature 197 217 - -
Lapu2g00269 860 PRINTS Copper-transporting ATPase 1 signature 217 242 - -
Lapu2g00269 860 FunFam ATPase copper transporting beta 1 64 - -
Lapu2g00269 860 PRINTS Copper-transporting ATPase signature 271 290 - -
Lapu2g00269 860 PRINTS Copper-transporting ATPase signature 430 444 - -
Lapu2g00269 860 PRINTS Copper-transporting ATPase signature 702 719 - -
Lapu2g00269 860 PRINTS Copper-transporting ATPase signature 219 238 - -
Lapu2g00269 860 PRINTS Copper-transporting ATPase signature 291 309 - -
Lapu2g00269 860 NCBIfam HAD-IC family P-type ATPase 274 807 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu2g00269 860 Gene3D - 1 66 - -
Lapu2g00269 860 SUPERFAMILY HAD-like 520 831 IPR036412 -
Lapu2g00269 860 SUPERFAMILY HMA, heavy metal-associated domain 1 63 IPR036163 GO:0046872
Lapu2g00269 860 Pfam Heavy-metal-associated domain 1 57 IPR006121 GO:0046872
Lapu2g00269 860 SFLD Haloacid Dehalogenase 503 777 - -
Lapu2g00269 860 SUPERFAMILY HMA, heavy metal-associated domain 66 132 IPR036163 GO:0046872
Lapu2g00269 860 Gene3D - 67 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00269 Lapu-Chr2 2171228 2175702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00269 1 854 Primary Pumps ATPases AT1G63440 78.438 0.0 1370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00269 K17686 - gmx:100816893 1468.37