Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00268 ATGGGTAAGAAGTTAGAGGGTTGGGAGTGCATGAGTAGTTTTCAGTGGTGTGGAAATTTGTGGCCTCAGCCACACTATCCGTCGATGAAGGGGGCGGAAGCAGGAAAGACGGTGGTGGAATTGGAAGGATCAGAGAGCAGAGTGGTTTTGTTCAGCGTTATGGGAATGACGTGTGCTGCGTGCGCCGGATCCGTCGAGAAAAGCATCAAACGCTTACCTGGGATTCGAGAGGCCGTTGTTGATGTGTTGAATCACAAAGCTCAGGTTCTTTACTTCCCGCCAATGGTTAACGAGGAGAGGATACGTGAGGCCATTGAAGATGCTGGATTTGAAGCCAAAGTTATTGAGGAAGAGTCGAACTACACCTCAGCTCAAATATGTCGCATACATGTACGAGGCATGACTTGTACTTCTTGCTCCTCCACTATTGAATCAGCTCTACAATCCCTTCGTGGGGTACATAAGGCACGAGTGGCCTTAACAACGGAAGAAGCAGAAGTCTACTATGACCCCAACATTCTCACCCACAACCACATAATGGAAGCCATACAAGACACCGGGTTCGAAGCCATACTAATAAGCACAGGGGAACACATGAGCAAGATTGAACTTAAAATTGATGGCATTAAAAACGACCGATCCCTTAGTGCCATTGACCACTCTCTCCATGCACTCCCTGGTGTTGAAACCATAGACATATATCCGGACATCAACAAAATTTCCATTACTTATAAACCACACATGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCCACCGGATCAGGGTGTTTTAAAGCGGTGATATTTCCAAATGATGAAGGAAAAGAAGCACTGAGACAGAAGGAAATTAACCGGTACTTCAAGCTGTTCACATGGAGTTTGGCTTTGACCATTCCTGTTTTCTTGACATCCATGGTCCTCATGTATATACCTGGACTTAAACGAGTTTTGGATATCAAAGTTGTCAATATGTTGAATATTGGACTTCTCTTGAGGTGTAACTTTGCTACCCCGGTGCAGTTTATCATAGGAAGAAGGTTCTATGTTGGGGCATATAAAGCATTGCGCAAAGGTTCTGCTAACATGGATGTGTTGATAGCATTAGGGACAAATGCAGCGTATTTCTATTCTCTCTATGTTCTGGAAAGAGCCGTTTTCTCTCGGCATTTCAAAGGAAGTGATTTCTTTGAGACCAGCTCTATGCTTATTTCTTTTATTCTGTTGGGGAAGTATTTGGAGGTGTTAGCAAAGGGGAAGACATCTCAGGCCATATCAAAGCTTATGAACTTGACACCTGAGACAGCGACCTTGTTAACTCAAGATGACGATGGGAATGTTGTTTGTGAAAAACAAATTGATAGTCGGTTGATACAAAAGGACGATGTGATCAAGGTTGTTCCTGGTTCAAAAGTAGCATCAGATGGTTTTGTCATATGGGGACAAAGTCATGTAAATGAGAGCATGATAACCGGAGAGGCAAGGGCTGTGGCAAAGAGGAAGGGTGATATGGTGATTGGAGGCACTTTGAATGAGAATGGGGTTATGCATGTTAAGGTGACAAGAGTTGGATCAGAGAGTGCTCTCTCCCAGATTGTTCGACTTGTAGAGTCAGCCCAGATGGCTAAAGCTCCTGTTCAAAAACTTGCAGATCATATTTCTAAATATTTTGTTCCTCTGGTCATTGTGCTTTCTCTTTCAACATGGCTTTCCTGGTTTCTAGCTGGAAAGTTACACGCATACCCGAAATCTTGGATACCATCCTCCATGAACGACTTTGAGCTTGCACTTCAGTTTGGGATTTCGGTTATGGTCATTGCCTGCCCTTGTGCTCTAGGTCTAGCCACTCCTACGGCTGTTATGGTTGGTACTGGAGTTGGTGCAACACAAGGTGTGTTGATCAAAGGAGGGCGAGCATTAGAAAGTGCAAACAAGGTGAATTGCATTGTGTTTGACAAGACAGGAACCCTCACAATTGGAAAGCCAGTGGTTGTAACTACAAAACTCTTCAAAAAGATGTCAATTAAAGATTTCTATGAATTTACTGCTGCAGTAGAGGTGAACAGCGAACATCCAATAGCTAAGGCCATTGTTGAGCACGCCAAAAAGATCGTAGAAGAACAAAATCATTCCTGGCCAGAAGCACACAACTTCATTTCTGTTTCAGGCCATGGAGTGAAGGCCATTGTTCTAAACAAGGAAATATTGATTGGGAATAAAAAGATGATGCTGGATCATAACATAACCATTTCAGCAGATGCTGAAGAAATACTAGCAGAAGCTGAAAGCCTGGCTCAAACTGGGATTTTAGTATCCTTGGATGGAGAAGTCGCTGGAGTTTTGGCTGTATCAGATCCATTGAAACCTAGCGCCAATGAAGTTATTTCCATTCTTAATTCCATGAAAATTAAGAGCATCATGGTGACGGGTGATAACTGGGGTACTGCCAATTCCATAGCCAGACAAGCCGGTATTGAAACTGTCATAGCAGAGGCTCAACCTGATACTAAAGCAACTAAAATAAAAGAACTGCAGGCTTCTGGGTACACGGTGGCAATGGTGGGAGATGGCATCAACGACTCACCAGCACTTGTGGCAGCTGATGTTGGAATAGCAATAGGTGCTGGCACAGACATAGCAATTGAGGCAGCTGACATTGTTCTCATGAAGAGCAACTTGGAGGATATAATCATTGCCATTGACCTTGCAAACAAAACTTTCTCTCGTATTCGTCTAAACTACTTTTGGGCTTTGGCTTATAATCTCCTAGCCATCCCAATTGCTGCGGGCGTTCTTTACTCCTCCACTAGATTTCGGTTACCACCATGGATTGCTGGAGCTGCAATGGCTGCCTCTTCCCTCAGTGTGGTTTGCTCATCCCTCTTGTTAAAGAATTACAAGAGACCTACGAAGCTTAACAACATGGACATAAATGGTGTCAAGATTGAATAA 2955 0.4365 MGKKLEGWECMSSFQWCGNLWPQPHYPSMKGAEAGKTVVELEGSESRVVLFSVMGMTCAACAGSVEKSIKRLPGIREAVVDVLNHKAQVLYFPPMVNEERIREAIEDAGFEAKVIEEESNYTSAQICRIHVRGMTCTSCSSTIESALQSLRGVHKARVALTTEEAEVYYDPNILTHNHIMEAIQDTGFEAILISTGEHMSKIELKIDGIKNDRSLSAIDHSLHALPGVETIDIYPDINKISITYKPHMTGPRTFIEVIESTGSGCFKAVIFPNDEGKEALRQKEINRYFKLFTWSLALTIPVFLTSMVLMYIPGLKRVLDIKVVNMLNIGLLLRCNFATPVQFIIGRRFYVGAYKALRKGSANMDVLIALGTNAAYFYSLYVLERAVFSRHFKGSDFFETSSMLISFILLGKYLEVLAKGKTSQAISKLMNLTPETATLLTQDDDGNVVCEKQIDSRLIQKDDVIKVVPGSKVASDGFVIWGQSHVNESMITGEARAVAKRKGDMVIGGTLNENGVMHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSLSTWLSWFLAGKLHAYPKSWIPSSMNDFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGRALESANKVNCIVFDKTGTLTIGKPVVVTTKLFKKMSIKDFYEFTAAVEVNSEHPIAKAIVEHAKKIVEEQNHSWPEAHNFISVSGHGVKAIVLNKEILIGNKKMMLDHNITISADAEEILAEAESLAQTGILVSLDGEVAGVLAVSDPLKPSANEVISILNSMKIKSIMVTGDNWGTANSIARQAGIETVIAEAQPDTKATKIKELQASGYTVAMVGDGINDSPALVAADVGIAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLANKTFSRIRLNYFWALAYNLLAIPIAAGVLYSSTRFRLPPWIAGAAMAASSLSVVCSSLLLKNYKRPTKLNNMDINGVKIE* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00268 984 CDD P-type_ATPase_Cu-like 292 951 - -
Lapu2g00268 984 SFLD Haloacid Dehalogenase 633 906 - -
Lapu2g00268 984 FunFam Copper-transporting ATPase HMA5 46 117 - -
Lapu2g00268 984 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Lapu2g00268 984 SUPERFAMILY HMA, heavy metal-associated domain 124 197 IPR036163 GO:0046872
Lapu2g00268 984 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Lapu2g00268 984 SUPERFAMILY HMA, heavy metal-associated domain 196 265 IPR036163 GO:0046872
Lapu2g00268 984 Gene3D - 419 541 - -
Lapu2g00268 984 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Lapu2g00268 984 PRINTS P-type cation-transporting ATPase superfamily signature 855 874 - -
Lapu2g00268 984 PRINTS P-type cation-transporting ATPase superfamily signature 780 791 - -
Lapu2g00268 984 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Lapu2g00268 984 PRINTS P-type cation-transporting ATPase superfamily signature 802 812 - -
Lapu2g00268 984 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Lapu2g00268 984 PRINTS P-type cation-transporting ATPase superfamily signature 878 890 - -
Lapu2g00268 984 NCBIfam heavy metal translocating P-type ATPase 364 964 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lapu2g00268 984 SUPERFAMILY Calcium ATPase, transmembrane domain M 401 644 IPR023298 -
Lapu2g00268 984 Pfam E1-E2 ATPase 432 629 - -
Lapu2g00268 984 Gene3D - 618 912 IPR023214 -
Lapu2g00268 984 FunFam Probable copper-transporting ATPase HMA5 766 912 - -
Lapu2g00268 984 SUPERFAMILY Calcium ATPase, transduction domain A 452 537 IPR008250 -
Lapu2g00268 984 Gene3D - 196 270 - -
Lapu2g00268 984 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Lapu2g00268 984 PRINTS Copper-transporting ATPase 1 signature 149 170 - -
Lapu2g00268 984 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Lapu2g00268 984 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Lapu2g00268 984 ProSiteProfiles Heavy-metal-associated domain profile. 200 266 IPR006121 GO:0046872
Lapu2g00268 984 NCBIfam HAD-IC family P-type ATPase 404 937 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu2g00268 984 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Lapu2g00268 984 FunFam Copper-transporting ATPase 1, putative 419 541 - -
Lapu2g00268 984 Pfam haloacid dehalogenase-like hydrolase 647 869 - -
Lapu2g00268 984 Gene3D - 125 195 - -
Lapu2g00268 984 FunFam ATPase copper transporting beta 122 195 - -
Lapu2g00268 984 CDD HMA 51 113 IPR006121 GO:0046872
Lapu2g00268 984 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 17 980 - -
Lapu2g00268 984 CDD HMA 131 190 IPR006121 GO:0046872
Lapu2g00268 984 NCBIfam copper ion binding protein 51 112 IPR006122 GO:0005507
Lapu2g00268 984 NCBIfam copper ion binding protein 129 190 IPR006122 GO:0005507
Lapu2g00268 984 SFLD p-type atpase 633 906 IPR044492 -
Lapu2g00268 984 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Lapu2g00268 984 Pfam Heavy-metal-associated domain 51 111 IPR006121 GO:0046872
Lapu2g00268 984 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Lapu2g00268 984 Gene3D - 43 115 - -
Lapu2g00268 984 SUPERFAMILY HMA, heavy metal-associated domain 45 118 IPR036163 GO:0046872
Lapu2g00268 984 SUPERFAMILY HAD-like 650 961 IPR036412 -
Lapu2g00268 984 Gene3D - 658 734 IPR023299 GO:0000166
Lapu2g00268 984 Gene3D - 735 786 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00268 Lapu-Chr2 2156616 2164699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00268 40 984 Primary Pumps ATPases AT1G63440 71.368 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00268 K17686 - gmx:100817431 1630.92