Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00250 ATGGGCTTTCCAGTGGGGTACACAGAGTTGGTGCTACCCAAGCTGCTTCTGCACCTCCTATCCCTATTGGGATTCATCAGGAGACTCCTCACCCTCCTCTTCTGCTACATCGGCTTCCACGATTTCTTCCAACCCGACATTGCCTGGCCGGAGAGGGTGCCCGAATTTCACTCCGTGTCCGCGCTGCTCATCCGGGAAATCCTTCCGGTCGTCAAGTTCTCCGAGATGGCGGAGACGGCCGAGAGTTGCGCGGTGTGTCTGTACGAGTTCGAGGGAGAGGACGAGATCAGACGGCTGACAAACTGTCGCCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGTTACGATCAAAGAACGTGCCCCCTCTGTCGGACACCCTTCATACCCCACCATATGCAAGCTGCCTTCAATGATAGACTATGGGCTGCTTCAGGGATCCCTCAATTCTATTACTATGATCAATGA 471 0.5456 MGFPVGYTELVLPKLLLHLLSLLGFIRRLLTLLFCYIGFHDFFQPDIAWPERVPEFHSVSALLIREILPVVKFSEMAETAESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLWAASGIPQFYYYDQ* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00250 156 SUPERFAMILY RING/U-box 63 132 - -
Lapu2g00250 156 PANTHER RING ZINC FINGER PROTEIN-RELATED 20 146 - -
Lapu2g00250 156 SMART ring_2 83 125 IPR001841 -
Lapu2g00250 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 133 IPR013083 -
Lapu2g00250 156 ProSiteProfiles Zinc finger RING-type profile. 83 126 IPR001841 -
Lapu2g00250 156 FunFam RING-H2 finger protein ATL73 64 133 - -
Lapu2g00250 156 Pfam Ring finger domain 82 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00250 Lapu-Chr2 2013713 2014183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00250 1 147 C3H Transcription Factor Family AT1G63840 58.442 2.25e-61 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00250 K16281 - gmx:102665617 265.388