Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00248 ATGGATCGACCACTGTGTGAAGACAAATCCTCATCTGGATTCTGCTACTCTGATGTATCATCGGGAAATCCAACGATGCTAGTGAACCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTCAGCACAGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATCCCCAAACCGGGTCCTTCCTCTTCCAAGACCATCAACGACTCTTCCACCGCTTTCTACCACCATGACTACAACAACAACAAGCCTTCAGATTTCACACCCGGGAATATCTCTGAAACAAGTGCCGAGAATCTAATCGTGGGAGCTCACGATTCAGCCCCGTGGCAAGACGACAACAACCATAGCAGGTTTGATGATTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGCCAACGAAAGGCCTAGTCAAGGTCTTTCACTATCGCTCAGTTCAACTAACCCTTCCACCATCGGGTTGCAATCTTTTGAGCTACGACAAACAAGCCATCATCCTGATTTTGTTCCCTCGAGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTGAGTGTTCAGCAGCAACAGATGTTACAAGATGGGTATGTGACTTCTAATTCCAAAGCTGCAAGTGTTTACCAACAAGGACATTTTCTGGTGAAGAACTCCAAGTATTTGGTGCCTGCACAGGACCTTCTCAACGAGTTTTGTAGCCTAGATGCAAAGCAAAGTGAGATGGGAAAGCCTAAATCGTTGAAGAAGCAGTGGGAAGATGATAACAACGGTACGGGTTCCTCGAAGAAGCATTCTCTGACCTCTCTCGAGTTCGTAGAATTACAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGGTACAAGCACTACCGCAATCAGATGAAGAGCGTGGTGTCGTCGTTTGAAGCAGTGGCGGGGAATGGTGCTGCCACGGTGTACTCGGCGTTGGCGCTGAAAGCCATGTCGAGACATTTCAAGTGTTTGAAGGATGGGATTTTGGGGCAGATTCAAGCAACAAGAAAAGCAATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGTGAAACGCCCAGGCTCAAAGTCATTGACCAAGCACTGAGACAACAAAGGGCGTTTCAGCAAATGAGCATGATGGAAACCCATCCTTGGAGACCCCAACGTGGCCTTCCCGAGCGTGCTGTTTCGGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGTGATGTGGATAAGCATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGCCAGGTTTCGAATTGGTTTATCAATGCAAGGGTGAGACTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGATCATGAAAACAACATAGCTTCCTCAGAGGGTGCTACTGATCCAGACAATGATATAAACCCAACTGTTCAAGACCCTCCACCTCATTCATCACGATCAGAGGATCAGAAGCCATCACTGGTTCGAATTGACTCCGAGTGTGCGTCCTCCATCATCAATAACCACACCCTAGATAACAAAAACGACCCAAAGGGCCAAGAACAGTGCTTTGGGTCGGTGGAGCTTGACTTTTCATCATACACACACCACTCATCGGGCATGGTTTCTTTCGGAAGTAATGACCAAAATGGGAACAACCAGAGCGGGGTGTCTTTGACGCTAGGGTTACAGCAGCATGGAGTGAGCCTAGCGTTCCCGCCACCAACACAGACTTCACTGTATTACCCAAACCCAAGGGACCAAATTGAAGATTGCCAACCAGTTCAGTACTCTCTTTTGGATGGTGAAGCACAAAACCCGCCTTACAGAAATTTGATGGGAGCGCAGCTTCTCCATGATTTGGCAGGATAG 1914 0.4791 MDRPLCEDKSSSGFCYSDVSSGNPTMLVNQIQGFVSDPEMYNLSTGMEMIGFPKSDTNAVMWRSFIPKPGPSSSKTINDSSTAFYHHDYNNNKPSDFTPGNISETSAENLIVGAHDSAPWQDDNNHSRFDDSSLRCVFPCEANERPSQGLSLSLSSTNPSTIGLQSFELRQTSHHPDFVPSSSREGFFGKPVSVQQQQMLQDGYVTSNSKAASVYQQGHFLVKNSKYLVPAQDLLNEFCSLDAKQSEMGKPKSLKKQWEDDNNGTGSSKKHSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFKCLKDGILGQIQATRKAMGEKDPVAPGTTRGETPRLKVIDQALRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDHENNIASSEGATDPDNDINPTVQDPPPHSSRSEDQKPSLVRIDSECASSIINNHTLDNKNDPKGQEQCFGSVELDFSSYTHHSSGMVSFGSNDQNGNNQSGVSLTLGLQQHGVSLAFPPPTQTSLYYPNPRDQIEDCQPVQYSLLDGEAQNPPYRNLMGAQLLHDLAG* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00248 637 SMART prehox3 216 346 IPR006563 -
Lapu2g00248 637 MobiDBLite consensus disorder prediction 250 266 - -
Lapu2g00248 637 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Lapu2g00248 637 MobiDBLite consensus disorder prediction 250 271 - -
Lapu2g00248 637 SMART HOX_1 397 461 IPR001356 GO:0003677
Lapu2g00248 637 SUPERFAMILY Homeodomain-like 398 464 IPR009057 -
Lapu2g00248 637 MobiDBLite consensus disorder prediction 476 497 - -
Lapu2g00248 637 FunFam BEL1-like homeodomain protein 4 400 462 - -
Lapu2g00248 637 Pfam Associated with HOX 222 344 IPR006563 -
Lapu2g00248 637 MobiDBLite consensus disorder prediction 475 508 - -
Lapu2g00248 637 CDD homeodomain 397 458 IPR001356 GO:0003677
Lapu2g00248 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 142 482 - -
Lapu2g00248 637 Gene3D - 400 462 - -
Lapu2g00248 637 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00248 Lapu-Chr2 1982107 1986090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00248 138 636 Homeobox Transcription Factor Family AT5G41410 48.897 1.98e-139 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu2g00248 POX 1.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00248 - - gmx:100803088 1139.79