Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00242 ATGGGTCACCACTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCTCCCGAGGAAGATGAGAAGCTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCACGGCGTTGTTGGCAACAGATGGGCACACATTGCAAGCCACTTACCAGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGACTTCATCAATCACCACTACACAAAGTGTCGATCACCACCCTCAGTTCAATTATAATTCTAATCAACTAGATCACTTTGGCAACCAAGACAATATAACAACAAAGCCACCGGTGCAAGAAACCATATTTTCCTCGACGTGCCCCCTATTTATGTTTGACACTAGTTCGTTAGACCATGGGACAACAACAGTAGACACCACCAACGTTCGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCAGTGAAACGTGGAACTTGAGCCACCACCAAGTTCATGCTCTTCCTCCTCAACCAGCAGCAGCAAATTTTACAGCAGCTACAGTCATCGATACTACAAATTATCTGCCACCGTTGATAGAGAACGTGGAAAACATGGTGCCGAACATGGAAGTACAGTCTTGTAGTATAGACGAGGAAGGAGAAATGGCACTGGAGTGTTTGCGGAGACAGGAGTTGAATGAGTGGGTGGAGAATCAACAACACTGTCCCAGTTTTCTTTTCTGGGACAACGTTGAAGGACAACTTGGGGGGGAAGAACTAGCACCAAACACGTCAAACATTGGAACCAATACACTTTCACCTTTTCCTTCCTCTTTATGA 966 0.442 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVTSSITTTQSVDHHPQFNYNSNQLDHFGNQDNITTKPPVQETIFSSTCPLFMFDTSSLDHGTTTVDTTNVRAELFQDSLGLSSETWNLSHHQVHALPPQPAAANFTAATVIDTTNYLPPLIENVENMVPNMEVQSCSIDEEGEMALECLRRQELNEWVENQQHCPSFLFWDNVEGQLGGEELAPNTSNIGTNTLSPFPSSL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00242 321 FunFam MYB transcription factor 6 66 - -
Lapu2g00242 321 CDD SANT 69 112 IPR001005 -
Lapu2g00242 321 MobiDBLite consensus disorder prediction 301 321 - -
Lapu2g00242 321 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lapu2g00242 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu2g00242 321 Gene3D - 6 66 - -
Lapu2g00242 321 PANTHER MYB DOMAIN PROTEIN 55 1 242 - -
Lapu2g00242 321 CDD SANT 17 61 IPR001005 -
Lapu2g00242 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu2g00242 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu2g00242 321 Gene3D - 68 140 - -
Lapu2g00242 321 SMART sant 66 114 IPR001005 -
Lapu2g00242 321 SMART sant 13 63 IPR001005 -
Lapu2g00242 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu2g00242 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu2g00242 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu2g00242 321 FunFam Transcription factor MYB26 68 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00242 Lapu-Chr2 1930310 1932752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00242 1 305 MYB Transcription Factor Family AT1G63910 51.524 1.05e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu2g00242 Myb_DNA-binding 4.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00242 K09422 K02947 gmx:100797787 612.838